PROJECT INFORMATION
GOLD Project ID
Gp0546024  
Project Name
Ideonella azotifigens DSM 21438  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Ideonella azotifigens strain:DSM 21438
NCBI BioProject Accession PRJNA550449
NCBI Locus Tag
FKP22  
NCBI BioSample Accession SAMN12129767
Source Sample ID
PI Unknown
Added By JGI automated process on 2021-03-11
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Agricultural
Sequencing Center Washington State University (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Ideonella azotifigens DSM 21438 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Ideonella azotifigens DSM 21438
Organism Ideonella azotifigens DSM 21438
Analysis Projects Ideonella azotifigens DSM 21438
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0031103
Organism Name
Ideonella azotifigens DSM 21438  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Ideonella  
Genus Synonyms
  
Species
Ideonella azotifigens  
Subspecies
  
Species Synonyms
  
Strain
DSM 21438  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 21438  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.14564  
Exemplar Name
Ideonella azotifigens  
Taxon DOI
10.1601/tx.14564  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 513160
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Pseudomonadota  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Sphaerotilaceae  
NCBI Genus
Ideonella  
NCBI Species
Ideonella azotifigens  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Roots  
Ecosystem Subtype
Rhizosphere  
Specific Ecosystem
Soil  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Soil
Rhizosphere
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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