PROJECT INFORMATION
GOLD Project ID
Gp0543936  
Project Name
Alkalibacter sp. M17DMB  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Alkalibacter sp. M17DMB Genome sequencing and assembly
NCBI BioProject ID 676094
NCBI BioProject Accession PRJNA676094
NCBI Locus Tag
IWB18  
NCBI BioSample Accession SAMN16748515
PI Maria Khomyakova
Added By Maria Khomyakova on 2021-02-04
Last Modified By Galina Ovchinnikova on 2021-02-05
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Research Center of Biotechnology of RAS
Collaborating Institute
  
Funding Agency
  
Project Description
genome of alkaliphilic microorganisms isolated from Taman Peninsula, Russia  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Alkalibacter sp. M17DMB Genome sequencing and assembly
Organism Alkalibacter sp. M17DMB
Analysis Projects Alkalibacter sp. M17DMB
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 2: High-Quality Draft
Contamination Screening Input
Contigs  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
reagent kit providing for 2x250 bp reading  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
39  
Chromosome Count
0  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0571180
Organism Name
Alkalibacter sp. M17DMB  
Other names (alias, synonyms, short names, common names)
Alkalibacter lacustris sp. nov. M17DMB  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Alkalibacter  
Genus Synonyms
  
Species
Alkalibacter sp. M17DMB  
Subspecies
  
Species Synonyms
  
Strain
M17DMB  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
KCTC 15920, VKM B-3408  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2787712
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Eubacteriaceae  
NCBI Genus
Alkalibacter  
NCBI Species
Alkalibacter sp. M17DMB  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
Halotolerant  
pH
8.5  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases Undefined
Known Habitats Lake
Metabolisms Saccharolytic
Phenotypes Alkaliphile
Energy Sources Chemoorganotroph

 

 

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