PROJECT INFORMATION
GOLD Project ID
Gp0543935  
Project Name
Pelobacter sp. M08fum  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Pelobacter sp. M08fum Genome sequencing and assembly
NCBI BioProject ID 662481
NCBI BioProject Accession PRJNA662481
NCBI Locus Tag
ICT70  
NCBI BioSample Accession SAMN16086442
PI Maria Khomyakova
Added By Maria Khomyakova on 2021-02-04
Last Modified By Galina Ovchinnikova on 2021-02-05
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Research Center of Biotechnology of RAS
Collaborating Institute
  
Funding Agency
  
Project Description
genome of alkaliphilic microorganisms isolated from terrestrial mud volcanoes  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Pelobacter sp. M08fum Genome sequencing and assembly
Organism Pelobacter sp. M08fum
Analysis Projects Pelobacter sp. M08fum
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 2: High-Quality Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
SPAdes v. 3.13.0  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
53  
Chromosome Count
0  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0571179
Organism Name
Pelobacter sp. M08fum  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-DELTA  
Genus
Pelobacter  
Genus Synonyms
  
Species
Pelobacter sp. M08fum  
Subspecies
  
Species Synonyms
  
Strain
M08fum  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2771352
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Deltaproteobacteria  
NCBI Order
Desulfuromonadales  
NCBI Family
Desulfuromonadaceae  
NCBI Genus
Pelobacter  
NCBI Species
Pelobacter sp. M08fum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Mud volcano  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
Undefined  
pH
9  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases Undefined
Known Habitats Mud
Metabolisms Arsenate-respiring
Phenotypes Alkaliphile
Energy Sources Chemotroph

 

 

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