PROJECT INFORMATION
GOLD Project ID
Gp0543594  
Project Name
Oxalobacter formigenes SSYG-15  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Oxalobacter formigenes SSYG-15 Genome sequencing
NCBI BioProject ID 556554
NCBI BioProject Accession PRJNA556554
NCBI Locus Tag
  
NCBI BioSample Accession SAMN12359453
PI Hong-jing Yu
Added By Supratim Mukherjee on 2021-02-01
Last Modified By Supratim Mukherjee on 2021-02-01
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Shanghai Sine Pharmaceutical Co., Ltd. (China)
Collaborating Institute
  
Funding Agency
  
Project Description
Oxalobacter formigenes SSYG-15 Genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Microbiol Resour Announc Genome Sequence of Oxalobacter formigenes Strain SSYG-15.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX6746020  (Link to NCBI )
Experiment Title SSYG15
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RT-PCR
Library Name SSYG15
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Oxalobacter formigenes SSYG-15
Organism Oxalobacter formigenes SSYG-15
Analysis Projects Oxalobacter formigenes SSYG-15
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS II
Library Method (MIGS-28)
SMRTbell template prep kit 1.0  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
49  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0570921
Organism Name
Oxalobacter formigenes SSYG-15  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Oxalobacter  
Genus Synonyms
  
Species
Oxalobacter formigenes  
Subspecies
  
Species Synonyms
  
Strain
SSYG-15  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 847
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Oxalobacteraceae  
NCBI Genus
Oxalobacter  
NCBI Species
Oxalobacter formigenes  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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