Studies
|
56,335 |
|
Biosamples
|
196,988 |
|
Sequencing Projects
|
525,361 |
|
Analysis Projects
|
384,993 |
| Organisms | 484,222 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0543369
|
|
Project Name
|
Chlorobaculum tepidum TLS transcriptome - C.tepidum_trial_B
|
|
Other Names
|
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name |
|
|
NCBI BioProject Accession
|
|
|
NCBI Locus Tag
|
|
|
NCBI BioSample Accession
|
|
|
Source Sample ID
|
|
| PI | Thomas E. Hanson |
| Added By | JGI automated process on 2021-01-25 |
| Last Modified By | JGI automated process on 2021-05-05 |
| Project Comments |
|
|
Project Status
|
incomplete
|
|
Project Relevance
|
|
|
Sequencing Center
|
DOE Joint Genome Institute (JGI)
(USA)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
|
|
Project Description
|
Chlorobaculum tepidum TLS transcriptome to expand our understanding of important C and S cycling microbes. Sample from cells grown in Pf7 thiosulfate
|
| Is JGI Project |
Yes
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
RNA |
|
Sequencing Strategy
|
Transcriptome
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
Unrestricted
|
|
JGI Award DOI
|
10.46936/10.25585/60001285 |
| JGI Portal Download | Raw Sequence Data |
|
Genome Publications
|
|
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Expanding the metabolic understanding of important Carbon and Sulfur cycling microbes |
| Organism |
Chlorobaculum tepidum TLS |
| Analysis Projects |
|
| Number of Analysis Projects (AP) |
0 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
|
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina NovaSeq S4 |
|
Library Method
(MIGS-28)
|
Illumina Low Input RNASeq w/rRNA Depletion, Tubes
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0000685 |
| Organism Name |
Chlorobaculum tepidum TLS
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
CHLOROBIOTA
|
| Genus |
Chlorobaculum
|
| Genus Synonyms |
|
| Species |
Chlorobaculum tepidum
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
TLS
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
ATCC 49652
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.788
|
| Exemplar Name |
Chlorobaculum tepidum
|
| Taxon DOI |
10.1601/tx.793
|
| Biosafety Level |
1
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
194439 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Chlorobiota
|
| NCBI Class |
Chlorobiia
|
| NCBI Order |
Chlorobiales
|
| NCBI Family |
Chlorobiaceae
|
| NCBI Genus |
Chlorobaculum
|
| NCBI Species |
Chlorobaculum tepidum
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Aquatic
|
| Ecosystem Type |
Thermal springs
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
162992 |
| Genbank 16S ID |
M58468 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Obligate anaerobe
|
| Cell Shape |
Rod-shaped
|
| Motility |
Nonmotile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Thermophile
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
Singles Chains |
| Diseases |
None |
| Known Habitats |
Aquatic Hot spring Fresh water |
| Metabolisms |
Nitrogen fixation |
| Phenotypes |
Green sulfur |
| Energy Sources |
Photosynthetic Photolithoautotroph |
| EXPERIMENT | |
|---|---|
| Experimental Conditions |
|
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the SP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Checking that this Sequencing Project can be made private:
Do you want to continue with this visibility change?
Changing the SP Sequencing Strategy will also effect these items:
Do you want to continue with this Sequencing Strategy change?
