PROJECT INFORMATION
GOLD Project ID
Gp0543368  
Project Name
Chlorobaculum tepidum TLS transcriptome - C.tepidum_trial_A  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
PI Thomas E. Hanson
Added By JGI automated process on 2021-01-25
Last Modified By JGI automated process on 2021-01-26
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Chlorobaculum tepidum TLS transcriptome to expand our understanding of important C and S cycling microbes. Sample from cells grown in Pf7 thiosulfate  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Expanding the metabolic understanding of important Carbon and Sulfur cycling microbes
Organism Chlorobaculum tepidum TLS
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq S4
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0000685
Organism Name
Chlorobaculum tepidum TLS  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CHLOROBI  
Genus
Chlorobaculum  
Genus Synonyms
  
Species
Chlorobaculum tepidum  
Subspecies
  
Species Synonyms
  
Strain
TLS  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 49652  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.788  
Exemplar Name
Chlorobaculum tepidum  
Taxon DOI
10.1601/tx.793  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 194439
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Chlorobi  
NCBI Class
Chlorobia  
NCBI Order
Chlorobiales  
NCBI Family
Chlorobiaceae  
NCBI Genus
Chlorobaculum  
NCBI Species
Chlorobaculum tepidum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 162992
Genbank 16S ID M58468
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Thermophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Chains
Diseases None
Known Habitats Hot spring
Aquatic
Fresh water
Metabolisms Nitrogen fixation
Phenotypes Green sulfur
Energy Sources Photosynthetic
Photolithoautotroph

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?