PROJECT INFORMATION
GOLD Project ID
Gp0543178  
Project Name
Sorted cell/s from microbial mat in river backwater pond, North Slope, Alaska, USA - Uncultured microbe JGI_EMERSN.Seep2B.SYBR.2.I12  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
PI David Emerson
Added By JGI automated process on 2021-01-21
Last Modified By JGI automated process on 2021-04-02
Project Comments
  
Project Status
targeted  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sorted cell/s from microbial mat in river backwater pond, North Slope, Alaska, USA  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome - Single Particle Sort  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Sediment chemolithoautotrophic microbial communities from various locations
Biosample Sorted cell/s from microbial mat in river backwater pond, North Slope, Alaska, USA - Uncultured microbe JGI_EMERSN.Seep2B.SYBR.2.I12
Organism
Analysis Projects Sorted cell/s from microbial mat in river backwater pond, North Slope, Alaska, USA - Uncultured microbe JGI_EMERSN.Seep2B.SYBR.2.I12
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Awaiting Sample
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NextSeq-HO
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Sorted cell/s from microbial mat in river backwater pond, North Slope, Alaska, USA - Uncultured microbe JGI_EMERSN.Seep2B.SYBR.2.I12
Other Names (alias, synonyms, short names)
  
Sample Description
Sorted cell/s from microbial mat in river backwater pond, North Slope, Alaska, USA  
SAMPLE TAXONOMY
NCBI Taxonomy ID 527640
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
River  
Specific Ecosystem
Microbial mats  

 

 

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