PROJECT INFORMATION
GOLD Project ID
Gp0543049  
Project Name
Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
PI Jennifer Bhatnagar
Added By JGI automated process on 2021-01-21
Last Modified By JGI automated process on 2021-11-08
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States; Pinus taeda roots were inoculated with Suillus cothurnatus and grown in the phytotron under 25C, 80% humidity and 12hrs/12hrs light/dark period before a soil sample was taken  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Restricted  
JGI Award DOI 10.46936/fics.proj.2017.49989/60006231
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Soil microbial communities from Duke University greenhouse, North Carolina, United States
Biosample Soil microbial communities from Duke University greenhouse, North Carolina, United States - AA1
Analysis Projects Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA1 (Eukaryote Community Metatranscriptome Expression - Self)
Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA1 (Eukaryote Community Metatranscriptome)
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq SP
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Soil microbial communities from Duke University greenhouse, North Carolina, United States - AA1
Other Names (alias, synonyms, short names)
  
Sample Description
Soil microbial communities from Duke University greenhouse, North Carolina, United States; Pinus taeda roots were inoculated with Suillus cothurnatus and grown in the phytotron under 25C, 80% humidity and 12hrs/12hrs light/dark period before a soil sample was taken  
SAMPLE TAXONOMY
NCBI Taxonomy ID 410658
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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