JGI GOLD | Project

PROJECT INFORMATION
GOLD Project ID	Gp0542333
Project Name	Paenibacillus sp. DA-C8
Other Names
Legacy GOLD ID
NCBI BioProject Name	A thermophilic facultative anaerobic bacterium, novel Paenibacillus sp DA-C8, possesses an efficient enzymatic system for xylan degradation
NCBI BioProject ID
NCBI BioProject Accession	PRJDB10171
NCBI Locus Tag	PRECH8
NCBI BioSample Accession	SAMD00235398
PI	Ayaka Uke
Added By	Ayaka Uke on 2021-01-06
Last Modified By	Ayaka Uke on 2021-01-06
Project Comments
Project Status	Permanent Draft
Project Relevance
Sequencing Center	National Center for Biotechnology Information (NCBI) (USA) DDBJ
Collaborating Institute
Funding Agency
Project Description	Paenibacillus sp. DA-C8, a thermophilic facultative anaerobic bacterium, possesses an efficient xylan degradation system. This bacterium may be novel species and unique xylan degradation enzymatic system. To understand the xylan degradation system of Paenibacillus, the genome analysis was carried out.
Is JGI Project	No
Project Information Visibility	Public
PROJECT TYPE
Specimen	Organism
Nucleic Acid	DNA
Sequencing Strategy	Whole Genome Sequencing
EXTERNAL PROJECT LINKS
Project Information
Database
Genome Publications
Other Publications
SRA Experiment
PROJECT COMPOSITION
Study	Paenibacillus sp. DA-C8
Organism	Paenibacillus sp. DA-C8
Analysis Projects
Number of Analysis Projects (AP)	0
Number of Derived Analyis Projects (DAP)	0

SEQUENCING INFORMATION
Sequencing Status	Complete
Sequencing Quality (MIGS-31)	Level 1: Standard Draft
Finishing Goal
Contamination Screening Input	Contigs
DNA Amplification Method
Sequencing Comments
DNA Amplification Kit
Sequencing Technology (MIGS-29)	Ion Torrent S5
Library Method (MIGS-28)
Library Layout	Single
Library Screening Method
Number Of Reads
Read Size
Vector
GC Percent
Chromosome Count
Plasmid Count

ORGANISM NAME
GOLD Organism ID	Go0570831
Organism Name	Paenibacillus sp. DA-C8
Other names (alias, synonyms, short names, common names)
Organism Domain	BACTERIAL
Phylogeny	FIRMICUTES
Genus	Paenibacillus
Genus Synonyms
Species	Paenibacillus sp. DA-C8
Subspecies
Species Synonyms
Strain	DA-C8
Strain Synonyms
Serovar/Cultivar
Culture Collection ID
Type Strain
Exemplar DOI
Exemplar Name
Taxon DOI
Biosafety Level
Organism Comments
Cultured	Yes
Culture Type	Isolate
Organism Type	Natural
Uncultured Type
Commercial Strain
Commercial Strain Comments
ORGANISM TAXONOMY
NCBI Taxonomy ID	2749268
NCBI Superkingdom	Bacteria
NCBI Kingdom
NCBI Phylum	Firmicutes
NCBI Class	Bacilli
NCBI Order	Bacillales
NCBI Family	Paenibacillaceae
NCBI Genus	Paenibacillus
NCBI Species	Paenibacillus sp. DA-C8
ISOLATION CLASSIFICATION
Ecosystem	Environmental
Ecosystem Category	Terrestrial
Ecosystem Type	Agricultural field
Ecosystem Subtype	Unclassified
Specific Ecosystem	Unclassified
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID

GENERAL PROPERTIES
Oxygen Requirement
Cell Shape
Motility
Sporulation
Temperature Range
Salinity
pH
Cell Diameter
Cell Length
Color
Gram Staining
Biotic Relationships
Symbiotic Physical Interaction
Symbiotic Relationship
Symbiont Name
Symbiont Taxon ID
Cell Arrangements
Diseases
Known Habitats	Terrestrial
Metabolisms
Phenotypes
Energy Sources

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