PROJECT INFORMATION
GOLD Project ID
Gp0507558  
Project Name
Fish farm associated microbial communities from Bethesda, Maryland, USA - haddock1_TVMBS  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Virus metagenome
NCBI BioProject Accession PRJNA393166
NCBI Locus Tag
  
NCBI BioSample Accession SAMN07319269
PI
Added By JGI automated process on 2020-10-12
Last Modified By Supratim Mukherjee on 2020-10-13
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Evolution
Sequencing Center National Cancer Institute (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Fish farm associated microbial communities from Bethesda, Maryland, USA  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications Elife Discovery of several thousand highly diverse circular DNA viruses.

SRA Experiment
 
SRA Experiment Id SRX3009445  (Link to NCBI )
Experiment Title haddock1_rca_miseq_exp1
Exp Library Strategy WGA
Library Source METAGENOMIC
Library Selection MDA
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Various animals tissue-associated viral communities from Bethesda, Maryland, USA
Biosample Fish farm associated microbial communities from Bethesda, Maryland, USA - haddock1_TVMBS
Analysis Projects Fish farm associated microbial communities from Bethesda, Maryland, USA - haddock1_TVMBS
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Fish farm associated microbial communities from Bethesda, Maryland, USA - haddock1_TVMBS
Other Names (alias, synonyms, short names)
  
Sample Description
Fish farm associated microbial communities from Bethesda, Maryland, USA  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1070528
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Fish  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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