PROJECT INFORMATION
GOLD Project ID
Gp0507556  
Project Name
Lab reagent viral communities from Bethesda, Maryland, USA - Reagent Control  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Animal metagenomes enriched for circular DNA viruses
NCBI BioProject Accession PRJNA393166
NCBI Locus Tag
  
NCBI BioSample Accession SAMN12412093
Source Sample ID
PI Unknown
Added By JGI automated process on 2020-10-12
Last Modified By Supratim Mukherjee on 2020-10-13
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Evolution
Sequencing Center National Cancer Institute (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Lab reagent viral communities from Bethesda, Maryland, USA  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications Elife: Discovery of several thousand highly diverse circular DNA viruses.
PubMed: 32014111 DOI: 10.7554/eLife.51971
SRA Experiment
 
SRA Experiment Id SRX6628127  (Link to NCBI )
Experiment Title lab_reagent2
Exp Library Strategy WGA
Library Source METAGENOMIC
Library Selection RANDOM
Library Name reagent2
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id SRX6628126  (Link to NCBI )
Experiment Title lab_reagent1
Exp Library Strategy WGA
Library Source METAGENOMIC
Library Selection RANDOM
Library Name reagent1
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id SRX6628128  (Link to NCBI )
Experiment Title lab_reagent3
Exp Library Strategy WGA
Library Source METAGENOMIC
Library Selection RANDOM
Library Name reagent3
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Various animals tissue-associated viral communities from Bethesda, Maryland, USA
Biosample Lab reagent viral communities from Bethesda, Maryland, USA - Reagent Control
Analysis Projects Lab reagent viral communities from Bethesda, Maryland, USA - Reagent Control
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Lab reagent viral communities from Bethesda, Maryland, USA - Reagent Control
Other Names (alias, synonyms, short names)
  
Sample Description
Lab reagent viral communities from Bethesda, Maryland, USA  
SAMPLE TAXONOMY
NCBI Taxonomy ID 256318
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Lab enrichment  
Ecosystem Type
Defined media  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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