PROJECT INFORMATION
GOLD Project ID
Gp0507539  
Project Name
Soil microbial communities from forest in Santa Rita do Passa , Quatro, Sao Paulo, Brazil - FOR-W_2  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Taxonomic and functional microbial profiles of sugarcane and forest soils in the tropical region
NCBI BioProject Accession PRJNA665014
NCBI Locus Tag
  
NCBI BioSample Accession SAMN16238505
Source Sample ID
PI Unknown
Added By JGI automated process on 2020-10-12
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Agricultural
Sequencing Center UNESP-FCAV
Collaborating Institute
  
Funding Agency
  
Project Description
Soil microbial communities from forest in Santa Rita do Passa , Quatro, Sao Paulo, Brazil during a wet period  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX9176015  (Link to NCBI )
Experiment Title This study utilized metagenomic sequencing to elucidate the interaction of sugarcane culture with the soil microorganisms involved in the biogeochemical carbon (C) and nitrogen (N) cycles by determining the diversity of genes involved in the metabolism of these elements.
Submitter Luciano Kishi ([email protected])
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name FOR-W_2
Library Layout PAIRED
Library Instrument Illumina HiScanSQ
PROJECT COMPOSITION
Study Forest and sugarcane field soil microbial communities from Santa Rita do Passa , Quatro, Sao Paulo, Brazil
Biosample Soil microbial communities from forest in Santa Rita do Passa , Quatro, Sao Paulo, Brazil - FOR-W_2
Analysis Projects Soil microbial communities from forest in Santa Rita do Passa , Quatro, Sao Paulo, Brazil - FOR-W_2
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiScanSQ
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Soil microbial communities from forest in Santa Rita do Passa , Quatro, Sao Paulo, Brazil - FOR-W_2
Other Names (alias, synonyms, short names)
  
Sample Description
Soil microbial communities from forest in Santa Rita do Passa , Quatro, Sao Paulo, Brazil during a wet period  
SAMPLE TAXONOMY
NCBI Taxonomy ID 410658
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Tropical forest  
Specific Ecosystem
Bulk soil  

 

 

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