PROJECT INFORMATION
GOLD Project ID
Gp0505486  
Project Name
Lab enriched terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA - DeMMO3_enrich  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject Accession PRJNA563685
NCBI Locus Tag
  
NCBI BioSample Accession
PI Magdalena Osburn
Added By Caitlin Casar on 2020-09-15
Last Modified By Supratim Mukherjee on 2021-08-16
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center Microbial Genome Sequencing Center (MiGS) (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA
Biosample Lab enriched terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA - DeMMO3_enrich
Analysis Projects Lab enriched terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA - DeMMO3_enrich
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
sequenced at Microbial Genome Sequencing Center in Pittsburgh, pA  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NextSeq 550
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Lab enriched terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA - DeMMO3_enrich
Other Names (alias, synonyms, short names)
  
Sample Description
Lab enrichment culture inoculated with fracture fluids collected 2000 feet below surface.  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1564682
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Deep subsurface  
Ecosystem Subtype
Aquifer  
Specific Ecosystem
  

 

 

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