PROJECT INFORMATION
GOLD Project ID
Gp0502377  
Project Name
Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - Treefall.Mar18.R3  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - Treefall.Mar18.R3
NCBI BioProject Accession PRJNA697287
NCBI Locus Tag
JON33  
NCBI BioSample Accession SAMN17675271
PI Rebecca Mueller
Added By JGI automated process on 2020-07-29
Last Modified By JGI automated process on 2022-09-03
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60001182
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX10106455  (Link to NCBI )
Experiment Title Treefall.Mar18.R3
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection other
Library Name GYSWU
Library Layout PAIRED
PROJECT COMPOSITION
Study Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA
Biosample Sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - Treefall.Mar18.R3
Analysis Projects Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - Treefall.Mar18.R3 (Metagenome Metatranscriptome)
Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - Treefall.Mar18.R3 (Metagenome Metatranscriptome Expression - Self)
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq S4
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - Treefall.Mar18.R3
Other Names (alias, synonyms, short names)
  
Sample Description
Sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA  
SAMPLE TAXONOMY
NCBI Taxonomy ID 433727
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Hot (42-90C)  
Specific Ecosystem
Sediment  
EXPERIMENT
Experimental Conditions
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?