PROJECT INFORMATION
GOLD Project ID
Gp0502376  
Project Name
Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - Treefall.Mar18.R2  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
Source Sample ID
PI Rebecca Mueller
Added By JGI automated process on 2020-07-29
Last Modified By JGI automated process on 2023-01-31
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60001182
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA
Biosample Sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - Treefall.Mar18.R2
Analysis Projects Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - Treefall.Mar18.R2 (Metagenome Metatranscriptome)
Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - Treefall.Mar18.R2 (Metagenome Metatranscriptome Expression - Self)
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq S4
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - Treefall.Mar18.R2
Other Names (alias, synonyms, short names)
  
Sample Description
Sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA  
SAMPLE TAXONOMY
NCBI Taxonomy ID 433727
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Hot (42-90C)  
Specific Ecosystem
Sediment  
EXPERIMENT
Experimental Conditions
  

 

 

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