PROJECT INFORMATION
GOLD Project ID
Gp0502168  
Project Name
Bacillus albus 13.1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Draft Genome Sequences of Five Environmental Bacterial Isolates That Degrade PET and LDPE Plastic
NCBI BioProject ID 517285
NCBI BioProject Accession PRJNA517285
NCBI Locus Tag
  
NCBI BioSample Accession SAMN10824118
PI Jay Mellies
Added By Sabrina Edwards on 2020-07-20
Last Modified By Galina Ovchinnikova on 2020-07-21
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Oregon State University Center for Genome Research and Biocomputing
Collaborating Institute
  
Funding Agency National Science Foundation (NSF) (USA)
Project Description
Genome of PET biodegrading bacteria isolated from soil; was submitted to GenBank with a wrong strain name PFYN01  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX5623358  (Link to NCBI )
Experiment Title WGS of PTE degrading isolates
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection unspecified
Library Name Isolate-13-1_S4
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study PET project Bacillus species genomes
Organism Bacillus albus 13.1
Analysis Projects Bacillus albus 13.1
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
For library preparation, performed at the Oregon State University (OSU) Center for Genome Research and Biocomputing, Illumina’s Nextera XT DNA sample prep kit (San Diego, CA) was used, following the manufacturer’s instructions.  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
llumina’s Nextera XT DNA sample prep kit (San Diego, CA) was used, following the manufacturer’s instructions.  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0551169
Organism Name
Bacillus albus 13.1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Bacillus  
Genus Synonyms
  
Species
Bacillus albus  
Subspecies
  
Species Synonyms
  
Strain
13.1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2026189
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Bacillales  
NCBI Family
Bacillaceae  
NCBI Genus
Bacillus  
NCBI Species
Bacillus albus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Oil-contaminated  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
Undefined  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Undefined
Known Habitats Undefined
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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