JGI GOLD | Project

PROJECT INFORMATION
GOLD Project ID	Gp0502049
Project Name	Pelagibacteraceae bacterium AG-439-N17
Other Names
Legacy GOLD ID
NCBI BioProject Name	Charting the complexity of the marine microbiome through single cell genomics
NCBI BioProject Accession	PRJEB33281
NCBI Locus Tag
NCBI BioSample Accession	SAMEA6080373
Source Sample ID
PI	Unknown
Added By	JGI automated process on 2020-07-09
Last Modified By
Project Comments
Project Status	Permanent Draft
Project Relevance
Sequencing Center	Woods Hole Oceanographic Institution (USA)
Collaborating Institute
Funding Agency
Project Description	Single cell genomic sequencing to chart the complexity of the marine microbiome
Is JGI Project	No
Project Information Visibility	Public
PROJECT TYPE
Specimen	Organism
Nucleic Acid	DNA
Sequencing Strategy	Whole Genome Sequencing
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
JGI Award DOI
Genome Publications
Other Publications
Ignored Publications
Unassigned Publications	Cell: 179(7):1623-1635.e11 Charting the Complexity of the Marine Microbiome through Single-Cell Genomics. PubMed: 31835036 DOI: 10.1016/j.cell.2019.11.017
SRA Experiment
PROJECT COMPOSITION
Study	Charting the complexity of the marine microbiome through single cell genomics
Organism	Pelagibacteraceae bacterium AG-439-N17
Analysis Projects	Pelagibacteraceae bacterium AG-439-N17
Number of Analysis Projects (AP)	1
Number of Derived Analyis Projects (DAP)	0

SEQUENCING INFORMATION
Sequencing Status	Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
DNA Amplification Method
Sorting Technology
Single Cell Lysis Protocol
Single Cell Lysis Approach
Sequencing Comments
DNA Amplification Kit
Sequencing Technology (MIGS-29)
Library Method (MIGS-28)
Library Layout
Library Screening Method
Number Of Reads
Read Size
Vector
GC Percent
Chromosome Count
Plasmid Count

ORGANISM NAME
GOLD Organism ID	Go0551069
Organism Name	Pelagibacteraceae bacterium AG-439-N17
Other names (alias, synonyms, short names, common names)
Organism Domain	BACTERIAL
Phylogeny	PROTEOBACTERIA-ALPHA
Genus
Genus Synonyms
Species	Pelagibacteraceae bacterium AG-439-N17
Subspecies
Species Synonyms
Strain	AG-439-N17
Strain Synonyms
Serovar/Cultivar
Culture Collection ID
Type Strain
Exemplar DOI
Exemplar Name
Taxon DOI
Biosafety Level
Organism Comments
Cultured	No
Culture Type
Organism Type	Natural
Uncultured Type	Single Cell
Commercial Strain
Commercial Strain Comments
ORGANISM TAXONOMY
NCBI Taxonomy ID	1667051
NCBI Superkingdom	Bacteria
NCBI Kingdom
NCBI Phylum	Pseudomonadota
NCBI Class	Alphaproteobacteria
NCBI Order	Candidatus Pelagibacterales
NCBI Family	Pelagibacteraceae
NCBI Genus
NCBI Species	uncultured Pelagibacteraceae bacterium
ISOLATION CLASSIFICATION
Ecosystem	Environmental
Ecosystem Category	Aquatic
Ecosystem Type	Marine
Ecosystem Subtype	Pelagic zone
Specific Ecosystem	Unclassified
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID

GENERAL PROPERTIES
Oxygen Requirement
Cell Shape
Motility
Sporulation
Temperature Range
Salinity
pH
Cell Diameter
Cell Length
Color
Gram Staining
Biotic Relationships
Symbiotic Physical Interaction
Symbiotic Relationship
Symbiont Name
Symbiont Taxon ID
Cell Arrangements
Diseases
Known Habitats	Marine
Metabolisms
Phenotypes
Energy Sources

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