PROJECT INFORMATION
GOLD Project ID
Gp0496600  
Project Name
Pseudomonas rhizoryzae RY24  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Pseudomonas rhizoryzae RY24 genome sequencing
NCBI BioProject Accession PRJNA533889
NCBI Locus Tag
FAZ11  
NCBI BioSample Accession SAMN11470674
PI
Added By JGI automated process on 2020-07-06
Last Modified By Mahathi Kandimalla on 2020-08-13
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Institute of Agricultural Resources and Regional Planning,CAAS
Collaborating Institute
  
Funding Agency
  
Project Description
Pseudomonas rhizoryzae RY24 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
Genome Publications International Journal of Systematic and Evolutionary Microbiology 54(Pt 5):1633-1637 Pseudomonas psychrotolerans sp. nov.

Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Pseudomonas rhizoryzae RY24 genome sequencing
Organism Pseudomonas rhizoryzae RY24
Analysis Projects Pseudomonas rhizoryzae RY24
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
64  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0545666
Organism Name
Pseudomonas rhizoryzae RY24  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pseudomonas  
Genus Synonyms
  
Species
Pseudomonas rhizoryzae  
Subspecies
  
Species Synonyms
  
Strain
RY24  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
JCM 33201  
Type Strain
Yes  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2571129
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pseudomonadales  
NCBI Family
Pseudomonadaceae  
NCBI Genus
Pseudomonas  
NCBI Species
Pseudomonas rhizoryzae  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Roots  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID MK759856
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
Halophile  
pH
6  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Rice
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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