Studies
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56,337 |
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Biosamples
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196,975 |
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Sequencing Projects
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525,356 |
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Analysis Projects
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385,119 |
| Organisms | 484,232 |
| PROJECT INFORMATION | |||||||||||||||||||
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GOLD Project ID
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Gp0495422
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Project Name
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Pantoea sp. VH_4
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Pantoea sp. VH_4 genome sequencing | ||||||||||||||||||
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NCBI BioProject Accession
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PRJNA563888 |
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NCBI Locus Tag
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F3I58
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NCBI BioSample Accession
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SAMN12692275 |
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Source Sample ID
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| PI | Unknown | ||||||||||||||||||
| Added By | JGI automated process on 2020-07-06 | ||||||||||||||||||
| Last Modified By | |||||||||||||||||||
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Agricultural |
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Sequencing Center
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University of California, Davis
(USA)
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Collaborating Institute
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Funding Agency
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Project Description
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Pantoea sp. VH_4 genome sequencing
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| Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||
| Study |
Genomic diversity of phyloplane-associated Pantoea species in Pakistan cotton crop |
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| Organism |
Pantoea sp. VH_4 |
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| Analysis Projects |
Pantoea sp. VH_4 |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0544504 |
| Organism Name |
Pantoea sp. VH_4
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| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
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| Phylogeny |
PROTEOBACTERIA-GAMMA
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| Genus |
Pantoea
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| Genus Synonyms |
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| Species |
Pantoea sp. VH_4
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| Subspecies |
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| Species Synonyms |
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| Strain |
VH_4
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
|
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| NCBI Taxonomy ID |
2608047 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
|
| NCBI Phylum |
Pseudomonadota
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| NCBI Class |
Gammaproteobacteria
|
| NCBI Order |
Enterobacterales
|
| NCBI Family |
Erwiniaceae
|
| NCBI Genus |
Pantoea
|
| NCBI Species |
Pantoea sp. VH_4
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Plants
|
| Ecosystem Type |
Phyllosphere
|
| Ecosystem Subtype |
Phylloplane/Leaf
|
| Specific Ecosystem |
Unclassified
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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