PROJECT INFORMATION
GOLD Project ID
Gp0495418  
Project Name
Pantoea sp. VH_18  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Pantoea sp. VH_18 genome sequencing
NCBI BioProject ID 563888
NCBI BioProject Accession PRJNA563888
NCBI Locus Tag
F3I54  
NCBI BioSample Accession SAMN12692271
PI
Added By JGI automated process on 2020-07-06
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Agricultural
Sequencing Center University of California, Davis (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Pantoea sp. VH_18 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX6808781  (Link to NCBI )
Experiment Title Pakistan Pantoea Collection VH_18
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection Reduced Representation
Library Name VH_18.S86_L008
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_4000
PROJECT COMPOSITION
Study Genomic diversity of phyloplane-associated Pantoea species in Pakistan cotton crop
Organism Pantoea sp. VH_18
Analysis Projects Pantoea sp. VH_18
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0544500
Organism Name
Pantoea sp. VH_18  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pantoea  
Genus Synonyms
  
Species
Pantoea sp. VH_18  
Subspecies
  
Species Synonyms
  
Strain
VH_18  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2608043
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Erwiniaceae  
NCBI Genus
Pantoea  
NCBI Species
Pantoea sp. VH_18  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Phyllosphere  
Ecosystem Subtype
Leaf  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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