Studies
|
56,336 |
|
Biosamples
|
196,971 |
|
Sequencing Projects
|
525,344 |
|
Analysis Projects
|
385,119 |
| Organisms | 484,224 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0494985
|
|
Project Name
|
Peptacetobacter hominis ZHW00191
|
|
Other Names
|
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name | Peptacetobacter hominis ZHW00191 |
|
NCBI BioProject Accession
|
PRJNA521730 |
|
NCBI Locus Tag
|
EXD82
|
|
NCBI BioSample Accession
|
SAMN10909883 |
|
Source Sample ID
|
|
| PI | Unknown |
| Added By | JGI automated process on 2020-07-06 |
| Last Modified By | Supratim Mukherjee on 2023-02-11 |
| Project Comments |
|
|
Project Status
|
Permanent Draft
|
|
Project Relevance
|
Medical |
|
Sequencing Center
|
Zhujiang Hospital, Southern Medical University
(China)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
|
|
Project Description
|
Peptostreptococcaceae bacterium ZHW00191 genome sequencing
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
|
Genome Publications
|
International Journal of Systematic and Evolutionary Microbiology: 70(5):2988-2997 . PubMed: 32369000 DOI: 10.1099/ijsem.0.003925 |
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Peptostreptococcaceae bacterium ZHW00191 genome sequencing |
| Organism |
Peptacetobacter hominis ZHW00191 |
| Analysis Projects |
Peptostreptococcaceae bacterium ZHW00191 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
|
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina HiSeq |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
33
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0544072 |
| Organism Name |
Peptacetobacter hominis ZHW00191
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
BACILLOTA
|
| Genus |
Peptacetobacter
|
| Genus Synonyms |
|
| Species |
Peptacetobacter hominis
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
ZHW00191
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
JCM 33482
|
| Type Strain |
Yes
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
2743610 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Bacillota
|
| NCBI Class |
Clostridia
|
| NCBI Order |
Eubacteriales
|
| NCBI Family |
Peptostreptococcaceae
|
| NCBI Genus |
Peptacetobacter
|
| NCBI Species |
Peptacetobacter hominis
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Mammals: Human
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
MK144347 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Obligate anaerobe
|
| Cell Shape |
Rod-shaped
|
| Motility |
Nonmotile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Mesophile
|
| Salinity |
Halotolerant
|
| pH |
5.5
|
| Cell Diameter |
0.7–1 μm
|
| Cell Length |
3.2-8 μm
|
| Color |
Grey
|
| Gram Staining |
Gram+
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
Human feces |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the SP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Checking that this Sequencing Project can be made private:
Do you want to continue with this visibility change?
Changing the SP Sequencing Strategy will also effect these items:
Do you want to continue with this Sequencing Strategy change?
