PROJECT INFORMATION
GOLD Project ID
Gp0493591  
Project Name
Pelagibacterium montanilacus CCL18  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Pelagibacterium montanilacus CCL18 genome sequencing
NCBI BioProject Accession PRJNA511804
NCBI Locus Tag
EO136  
NCBI BioSample Accession SAMN10659957
Source Sample ID
PI Unknown
Added By JGI automated process on 2020-07-02
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Second Institute of Oceanography, State Oceanic Administration
Collaborating Institute
  
Funding Agency
  
Project Description
Pelagibacterium montanilacus CCL18 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications Extremophiles: 16(3):427-35 Cloning, expression and characterization of a halotolerant esterase from a marine bacterium Pelagibacterium halotolerans B2T.
PubMed: 22481638 DOI: 10.1007/s00792-012-0442-3
Fish & shellfish immunology: Pathogen invasion changes the intestinal microbiota composition and induces innate immune responses in the zebrafish intestine.
PubMed: 28964859 DOI: 10.1016/j.fsi.2017.09.075
Show more publications...

International Journal of Systematic and Evolutionary Microbiology: 68(7):2220-2225 Pelagibacterium montanilacus sp. nov., an alkaliphilic bacterium isolated from Lake Cuochuolong on the Tibetan Plateau.
PubMed: 29749925 DOI: 10.1099/ijsem.0.002812
International Journal of Systematic and Evolutionary Microbiology: 67(9):3182-3185 Pelagibacterium lentulum sp. nov., a marine bacterium from the culture broth of Picochlorum sp. 122.
PubMed: 28840801 DOI: 10.1099/ijsem.0.002054
Extremophiles: 20(1):37-44 Characterization of a novel metallo-β-lactamases fold hydrolase from Pelagibacterium halotolerans, a marine halotolerant bacterium isolated from East China Sea.
PubMed: 26560315 DOI: 10.1007/s00792-015-0795-5
International Journal of Systematic and Evolutionary Microbiology: 61(Pt 8):1817-1822 Pelagibacterium halotolerans gen. nov., sp. nov. and Pelagibacterium luteolum sp. nov., novel members of the family Hyphomicrobiaceae.
PubMed: 20817840 DOI: 10.1099/ijs.0.023325-0
Current microbiology: 72(5):551-6 Pelagibacterium lixinzhangensis sp. nov., a Novel Member of the Genus Pelagibacterium.
PubMed: 26787545 DOI: 10.1007/s00284-016-0989-9
Current microbiology: 66(5):450-5 Pelagibacterium nitratireducens sp.nov., a marine Alphaproteobacterium isolated from the East China Sea.
PubMed: 23299946 DOI: 10.1007/s00284-012-0299-9
Scientific reports: 7(1):4422 Crystal structure of Pelagibacterium halotolerans PE8: New insight into its substrate-binding pattern.
PubMed: 28667306 DOI: 10.1038/s41598-017-04550-7
SRA Experiment
  
PROJECT COMPOSITION
Study Genus Pelagibacterium genome sequencing and assembly
Organism Pelagibacterium montanilacus CCL18
Analysis Projects Pelagibacterium montanilacus CCL18
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0542702
Organism Name
Pelagibacterium montanilacus CCL18  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Pelagibacterium  
Genus Synonyms
  
Species
Pelagibacterium montanilacus  
Subspecies
  
Species Synonyms
  
Strain
CCL18  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2185280
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Hyphomicrobiales  
NCBI Family
Devosiaceae  
NCBI Genus
Pelagibacterium  
NCBI Species
Pelagibacterium montanilacus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lake  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?