PROJECT INFORMATION
GOLD Project ID
Gp0493037  
Project Name
Roseivivax sp. THAF30  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Roseivivax sp. THAF30 genome sequencing
NCBI BioProject Accession PRJNA547984
NCBI Locus Tag
FIU91  
NCBI BioSample Accession SAMN11996117
PI
Added By JGI automated process on 2020-07-02
Last Modified By JGI automated process on 2020-07-03
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Sequencing Center Bielefeld University (Germany)
Collaborating Institute
  
Funding Agency
  
Project Description
Roseivivax sp. THAF30 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX7010725  (Link to NCBI )
Experiment Title ONT SQK-RBK004 library of THAF030 gDNA: R9.4.1 flowcell
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name THAF030_ONT
Library Layout SINGLE
Library Instrument GRID_ION
 
SRA Experiment Id SRX7010724  (Link to NCBI )
Experiment Title Illumina TruSeq PCR-free library of THAF030 gDNA: 2x 300nt paired-end run
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name THAF030_TSPf
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Microplastic colonizing bacteria
Organism Roseivivax sp. THAF30
Analysis Projects Roseivivax sp. THAF30
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Oxford Nanopore
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0542162
Organism Name
Roseivivax sp. THAF30  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Roseivivax  
Genus Synonyms
  
Species
Roseivivax sp. THAF30  
Subspecies
  
Species Synonyms
  
Strain
THAF30  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2587852
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Roseobacteraceae  
NCBI Genus
Roseivivax  
NCBI Species
Roseivivax sp. THAF30  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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