Studies
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56,335 |
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Biosamples
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196,988 |
|
Sequencing Projects
|
525,361 |
|
Analysis Projects
|
384,993 |
| Organisms | 484,222 |
| PROJECT INFORMATION | |||||||||||||||||||
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GOLD Project ID
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Gp0492524
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Project Name
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Aquabacterium pictum W35
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Aquabacterium pictum W35 genome sequencing | ||||||||||||||||||
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NCBI BioProject Accession
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PRJDB7996 |
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NCBI Locus Tag
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FFT10
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NCBI BioSample Accession
|
SAMD00161080 |
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Source Sample ID
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| PI | Unknown | ||||||||||||||||||
| Added By | JGI automated process on 2020-07-02 | ||||||||||||||||||
| Last Modified By | Mahathi Kandimalla on 2023-02-02 | ||||||||||||||||||
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Evolution |
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Sequencing Center
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Biological Sciences, Tokyo Metropolitan University
(Japan)
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Collaborating Institute
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Funding Agency
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Project Description
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Aquabacterium pictum W35 genome sequencing
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| Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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International Journal of Systematic and Evolutionary Microbiology: 70(1):596-603 . PubMed: 31622237 DOI: 10.1099/ijsem.0.003798 |
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||
| Study |
Aquabacterium pictum W35 genome sequencing |
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| Organism |
Aquabacterium pictum W35 |
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| Analysis Projects |
Aquabacterium pictum W35 |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
|
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Finishing Goal
|
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Contamination Screening Input
|
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DNA Amplification Method
|
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Single Cell Lysis Protocol
|
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Single Cell Lysis Approach
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Sequencing Comments
|
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|
DNA Amplification Kit
|
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Sequencing Technology
(MIGS-29)
|
Illumina Miseq |
|
Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
|
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Vector
|
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| GC Percent |
70.4
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| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0541675 |
| Organism Name |
Aquabacterium pictum W35
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-BETA
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| Genus |
Aquabacterium
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| Genus Synonyms |
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| Species |
Aquabacterium pictum
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| Subspecies |
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| Species Synonyms |
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| Strain |
W35
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
DSM 106757
|
| Type Strain |
Yes
|
| Exemplar DOI |
|
| Exemplar Name |
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| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
2315236 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Pseudomonadota
|
| NCBI Class |
Betaproteobacteria
|
| NCBI Order |
Burkholderiales
|
| NCBI Family |
|
| NCBI Genus |
Aquabacterium
|
| NCBI Species |
Aquabacterium pictum
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Aquatic
|
| Ecosystem Type |
Freshwater
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Aerobe
|
| Cell Shape |
Rod-shaped
|
| Motility |
Nonmotile
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
|
| Cell Diameter |
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| Cell Length |
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| Color |
Pink
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| Gram Staining |
Gram-
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
|
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