PROJECT INFORMATION
GOLD Project ID
Gp0490945  
Project Name
Pyramidobacter sp. SM-530-WT-4B  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Pyramidobacter sp. SM-530-WT-4B genome sequencing
NCBI BioProject ID 561470
NCBI BioProject Accession PRJNA561470
NCBI Locus Tag
FYJ74  
NCBI BioSample Accession SAMN12619162
PI
Added By JGI automated process on 2020-07-02
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center RWTH Aachen University
Collaborating Institute
  
Funding Agency
  
Project Description
Pyramidobacter sp. SM-530-WT-4B genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Pig intestinal bacterial collection (PIBAC)
Organism Pyramidobacter sp. SM-530-WT-4B
Analysis Projects Pyramidobacter sp. SM-530-WT-4B
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0540103
Organism Name
Pyramidobacter sp. SM-530-WT-4B  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
SYNERGISTETES  
Genus
Pyramidobacter  
Genus Synonyms
  
Species
Pyramidobacter sp. SM-530-WT-4B  
Subspecies
  
Species Synonyms
  
Strain
SM-530-WT-4B  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 105193  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2605789
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Synergistetes  
NCBI Class
Synergistia  
NCBI Order
Synergistales  
NCBI Family
Synergistaceae  
NCBI Genus
Pyramidobacter  
NCBI Species
Pyramidobacter sp. SM-530-WT-4B  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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