PROJECT INFORMATION | |
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GOLD Project ID
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Gp0490131
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Project Name
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Lab-enriched soil microbial communities from a contaminated agricultural site, Guadeloupe, France - GammaHCH
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Other Names
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Legacy GOLD ID
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NCBI BioProject Name |
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NCBI BioProject Accession
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NCBI Locus Tag
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NCBI BioSample Accession
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PI | Elizabeth A. Edwards |
Added By |
Camilla Nesbø
on 2020-06-04 |
Last Modified By |
Galina Ovchinnikova
on 2020-06-08 |
Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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Beijing Genomics Institute (BGI)
(China)
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Collaborating Institute
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Funding Agency
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Project Description
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Is JGI Project |
No
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Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Biome |
Nucleic Acid
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DNA |
Sequencing Strategy
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Metagenome
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EXTERNAL PROJECT LINKS | |
JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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SRA Experiment |
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PROJECT COMPOSITION | |
Study |
Metagenomes of anaerobic enrichment cultures that dechlorinate hexachlorocyclohexane isomers |
Biosample |
Lab-enriched soil microbial communities from a contaminated agricultural site, Guadeloupe, France - GammaHCH |
Analysis Projects |
Lab-enriched soil microbial communities from a contaminated agricultural site, Guadeloupe, France - GammaHCH MSP Combined Assembly of Lab-enriched soil microbial communities from a contaminated agricultural site, Guadeloupe, France (All HCH) |
Number of Analysis Projects (AP) |
2 |
Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
Finishing Goal
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Level 1: Standard Draft |
Contamination Screening Input
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DNA Amplification Method
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Sorting Technology
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq |
Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
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Chromosome Count |
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Plasmid Count |
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SAMPLE NAME | |
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Sample Name |
Lab-enriched soil microbial communities from a contaminated agricultural site, Guadeloupe, France - GammaHCH |
Other Names (alias, synonyms, short names) |
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Sample Description |
Enrichment culture grown on Gamma-HCH in minimal mineral medium. Originally created from lindane, acetone and ethanol microcosms transforming lindane to monochlorobenzene and benzene. Soil originated from a lindane-contaminated agricultural site in Guadeloupe. Later transferred into liquid mineral medium amended with lindane, and less acetone and ethanol. This donor-reduced culture was used to create Delta- Alpha- Beta- HCH isomer enrichments.
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SAMPLE TAXONOMY | |
NCBI Taxonomy ID |
1169740 |
GOLD CLASSIFICATION | |
Ecosystem |
Environmental
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Ecosystem Category |
Terrestrial
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Ecosystem Type |
Soil
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Ecosystem Subtype |
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Specific Ecosystem |
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