PROJECT INFORMATION
GOLD Project ID
Gp0490131  
Project Name
Lab-enriched soil microbial communities from a contaminated agricultural site, Guadeloupe, France - GammaHCH  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
PI Elizabeth A. Edwards
Added By Camilla Nesbø on 2020-06-04
Last Modified By Galina Ovchinnikova on 2020-06-08
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Beijing Genomics Institute (BGI) (China)
Collaborating Institute
  
Funding Agency
  
Project Description
  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Metagenomes of anaerobic enrichment cultures that dechlorinate hexachlorocyclohexane isomers
Biosample Lab-enriched soil microbial communities from a contaminated agricultural site, Guadeloupe, France - GammaHCH
Analysis Projects Lab-enriched soil microbial communities from a contaminated agricultural site, Guadeloupe, France - GammaHCH MSP
Combined Assembly of Lab-enriched soil microbial communities from a contaminated agricultural site, Guadeloupe, France (All HCH)
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Lab-enriched soil microbial communities from a contaminated agricultural site, Guadeloupe, France - GammaHCH
Other Names (alias, synonyms, short names)
  
Sample Description
Enrichment culture grown on Gamma-HCH in minimal mineral medium. Originally created from lindane, acetone and ethanol microcosms transforming lindane to monochlorobenzene and benzene. Soil originated from a lindane-contaminated agricultural site in Guadeloupe. Later transferred into liquid mineral medium amended with lindane, and less acetone and ethanol. This donor-reduced culture was used to create Delta- Alpha- Beta- HCH isomer enrichments.  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1169740
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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