PROJECT INFORMATION
GOLD Project ID
Gp0484837  
Project Name
Phycorickettsia trachydisci CCALA 838  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Phycorickettsia trachydisci CCALA 838 Genome sequencing
NCBI BioProject ID 437624
NCBI BioProject Accession PRJNA437624
NCBI Locus Tag
phytr  
NCBI BioSample Accession SAMN08668684
PI
Added By JGI automated process on 2020-03-27
Last Modified By JGI automated process on 2020-03-30
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center University of Ostrava
Collaborating Institute
  
Funding Agency
  
Project Description
The aim of the project was to sequence total DNA of Trachydiscus minutus (Eustigmatophyceae), which reveal to contain bacterial symbiont of Rickettsiaceae family  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Phycorickettsia trachydisci CCALA 838 Genome sequencing
Organism Phycorickettsia trachydisci CCALA 838
Analysis Projects Phycorickettsia trachydisci CCALA 838
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0536178
Organism Name
Phycorickettsia trachydisci CCALA 838  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Phycorickettsia  
Genus Synonyms
  
Species
Phycorickettsia trachydisci  
Subspecies
  
Species Synonyms
  
Strain
CCALA 838  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2115978
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rickettsiales  
NCBI Family
Rickettsiaceae  
NCBI Genus
Candidatus Phycorickettsia  
NCBI Species
Candidatus Phycorickettsia trachydisci  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Protists  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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