PROJECT INFORMATION
GOLD Project ID
Gp0481041  
Project Name
Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.N13  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.N13
NCBI BioProject Accession PRJNA676659
NCBI Locus Tag
IWS09  
NCBI BioSample Accession SAMN16772989
Source Sample ID
PI Erik Lilleskov
Added By JGI automated process on 2020-03-17
Last Modified By JGI automated process on 2022-09-03
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sorted cell/s from PEATcosm Experiment in MTU Mesocosm Facility, Houghton, MI, USA  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome - Single Particle Sort  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60001027
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX9677234  (Link to NCBI )
Experiment Title Uncultured microbe JGI_Llskov.PC30cm.SYBR.1.N13
Exp Library Strategy OTHER
Library Source METAGENOMIC
Library Selection RANDOM
Library Name GXBUX
Library Layout PAIRED
PROJECT COMPOSITION
Study Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes
Biosample Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.N13
Analysis Projects Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.N13
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq S4
Library Method (MIGS-28)
Illumina Nextera - Acoustic, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.N13
Other Names (alias, synonyms, short names)
  
Sample Description
Sorted cell/s from PEATcosm Experiment in MTU Mesocosm Facility, Houghton, MI, USA  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1325974
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Wetlands  
Specific Ecosystem
Peat  

 

 

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