PROJECT INFORMATION
GOLD Project ID
Gp0479505  
Project Name
Cyclobacterium marinum Atlantic-IS  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Cyclobacterium marinum strain:Atlantic-IS Genome sequencing and assembly
NCBI BioProject Accession PRJNA562082
NCBI Locus Tag
  
NCBI BioSample Accession SAMN12634167
Source Sample ID
PI Indu Sharma
Added By Indu Sharma on 2020-02-09
Last Modified By Galina Ovchinnikova on 2020-02-11
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Juniata College, Pennsylvania
Collaborating Institute
  
Funding Agency
  
Project Description
Genome of Cyclobacteirum  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX6788345  (Link to NCBI )
Experiment Title Cyclobacterium Isolate
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name ISG-12019
Library Layout PAIRED
Library Instrument NEXT_SEQ_550
PROJECT COMPOSITION
Study Genome sequence of Cyclobacterium marinum Atlantic-IS
Organism Cyclobacterium marinum Atlantic-IS
Analysis Projects Cyclobacterium marinum Atlantic-IS
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0532782
Organism Name
Cyclobacterium marinum Atlantic-IS  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Cyclobacterium  
Genus Synonyms
  
Species
Cyclobacterium marinum  
Subspecies
  
Species Synonyms
  
Strain
Atlantic-IS  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 68288
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidota  
NCBI Class
Cytophagia  
NCBI Order
Cytophagales  
NCBI Family
Cyclobacteriaceae  
NCBI Genus
Cyclobacterium  
NCBI Species
  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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