PROJECT INFORMATION
GOLD Project ID
Gp0476555  
Project Name
Saliva microbial communities from individual in Luxembourg - M4.5-V2-saliva  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name human gut metagenome
NCBI BioProject Accession PRJNA289586
NCBI Locus Tag
  
NCBI BioSample Accession SAMN09842364
PI
Added By JGI automated process on 2020-01-24
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center University of Luxembourg
Collaborating Institute
  
Funding Agency
  
Project Description
Saliva microbial communities from individual in Luxembourg  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications Elife Extensive transmission of microbes along the gastrointestinal tract.

Nat Microbiol Integrated multi-omics of the human gut microbiome in a case study of familial type 1 diabetes.

Show more publications...

Proceedings of the National Academy of Sciences of the United States of America A catalog of tens of thousands of viruses from human metagenomes reveals hidden associations with chronic diseases.

SRA Experiment
 
SRA Experiment Id SRX4940450  (Link to NCBI )
Experiment Title metagenomics of human oral microbiome
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name M4.5-V2-saliva-metaG
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_4000
PROJECT COMPOSITION
Study Fecal microbial communities from healthy and diabetic individuals in Luxembourg Centre for Systems Biomedicine, Luxembourg
Biosample Saliva microbial communities from individual in Luxembourg - M4.5-V2-saliva
Analysis Projects Saliva microbial communities from individual in Luxembourg - M4.5-V2-saliva
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 4000
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Saliva microbial communities from individual in Luxembourg - M4.5-V2-saliva
Other Names (alias, synonyms, short names)
  
Sample Description
Saliva microbial communities from individual in Luxembourg  
SAMPLE TAXONOMY
NCBI Taxonomy ID
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals: Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral cavity  
Specific Ecosystem
Saliva  

 

 

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