PROJECT INFORMATION
GOLD Project ID
Gp0464765  
Project Name
Metatranscriptome of groundwater microbial communities from Rifle, Colorado, USA - Metatranscriptome of groundwater C2  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID 268031
NCBI BioProject Accession PRJNA268031
NCBI Locus Tag
  
NCBI BioSample Accession SAMN03202999
PI
Added By JGI automated process on 2019-12-11
Last Modified By Jagadish Sundaramurthi on 2021-05-04
Project Comments
  
Project Status
incomplete  
Project Relevance Environmental
Sequencing Center Banfield Lab, University of California, Berkeley
Collaborating Institute
  
Funding Agency
  
Project Description
Metatranscriptome of soil microbial communities from Rifle, Colorado, USA  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX957568  (Link to NCBI )
Experiment Title GWC2 RNA reads
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name 5500XL SOLiD(TM) platform
Library Layout SINGLE
Library Instrument AB_5500_XL_GENETIC_ANALYZER
PROJECT COMPOSITION
Study Soil microbial communities from Rifle, Colorado, USA
Biosample Groundwater microbial communities from Rifle, Colorado, USA - Groundwater C2
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Groundwater microbial communities from Rifle, Colorado, USA - Groundwater C2
Other Names (alias, synonyms, short names)
  
Sample Description
Groundwater microbial communities from Rifle Colorado, well C2  
SAMPLE TAXONOMY
NCBI Taxonomy ID 717931
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Groundwater  
Specific Ecosystem
  

 

 

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