PROJECT INFORMATION
GOLD Project ID
Gp0460447  
Project Name
Metatranscriptome of Rhizosphere microbial community from Florida, USA - S2r  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of Rhizosphere and Rhizopalne microbial community from Florida, USA
NCBI BioProject ID 324090
NCBI BioProject Accession PRJNA324090
NCBI Locus Tag
  
NCBI BioSample Accession SAMN05194637
PI
Added By JGI automated process on 2019-11-08
Last Modified By
Project Comments
  
Project Status
incomplete  
Project Relevance Agricultural
Sequencing Center Citrus Research and Education center, Univerisity of Florida
Collaborating Institute
  
Funding Agency
  
Project Description
Metatranscriptome of Rhizosphere and Rhizopalne microbial community from Florida, USA  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1819068  (Link to NCBI )
Experiment Title metatranscriptome of healthy rhizosphere sample 2
Exp Library Strategy WGS
Library Source METATRANSCRIPTOMIC
Library Selection size fractionation
Library Name S2r
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_4000
PROJECT COMPOSITION
Study Citrus rhizosphere and rhizoplane microbial communities from Lake Alfred, Florida, USA
Biosample Rhizosphere microbial community from Florida, USA - S2r
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Rhizosphere microbial community from Florida, USA - S2r
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizosphere  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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