PROJECT INFORMATION
GOLD Project ID
Gp0456562  
Project Name
Myxococcus xanthus KF4.3.9c1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Myxococcus xanthus
NCBI BioProject ID 342411
NCBI BioProject Accession PRJNA342411
NCBI Locus Tag
BHS07  
NCBI BioSample Accession SAMN05757021
PI Sebastien Wielgoss
Added By JGI automated process on 2019-10-23
Last Modified By JGI automated process on 2019-10-23
Project Comments
  
Project Status
Complete and Published  
Project Relevance Evolution
Sequencing Center ETH Zurich (Switzerland)
Collaborating Institute
  
Funding Agency
  
Project Description
Genome sequencing of Myxococcus xanthus isolated from soil  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications "Science (New York, N.Y.)" 363(6433):1342-1345 Social genes are selection hotspots in kin groups of a soil microbe.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX5168069  (Link to NCBI )
Experiment Title WGA of Myxococcus xanthus natural isolates
Exp Library Strategy WGA
Library Source GENOMIC
Library Selection RANDOM
Library Name MXANTHUS_KF4.3.9c1.7
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5112524  (Link to NCBI )
Experiment Title WGA of Myxococcus xanthus natural isolates
Exp Library Strategy WGA
Library Source GENOMIC
Library Selection RANDOM
Library Name MXANTHUS_KF4.3.9c1
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX5168068  (Link to NCBI )
Experiment Title WGA of Myxococcus xanthus natural isolates
Exp Library Strategy WGA
Library Source GENOMIC
Library Selection RANDOM
Library Name MXANTHUS_KF4.3.9c1.6
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5168073  (Link to NCBI )
Experiment Title WGA of Myxococcus xanthus natural isolates
Exp Library Strategy WGA
Library Source GENOMIC
Library Selection RANDOM
Library Name MXANTHUS_KF4.3.9c1.3
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5168072  (Link to NCBI )
Experiment Title WGA of Myxococcus xanthus natural isolates
Exp Library Strategy WGA
Library Source GENOMIC
Library Selection RANDOM
Library Name MXANTHUS_KF4.3.9c1.2
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5168064  (Link to NCBI )
Experiment Title WGA of Myxococcus xanthus natural isolates
Exp Library Strategy WGA
Library Source GENOMIC
Library Selection RANDOM
Library Name MXANTHUS_KF4.3.9c1.1
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5168075  (Link to NCBI )
Experiment Title WGA of Myxococcus xanthus natural isolates
Exp Library Strategy WGA
Library Source GENOMIC
Library Selection RANDOM
Library Name MXANTHUS_KF4.3.9c1.5
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5168074  (Link to NCBI )
Experiment Title WGA of Myxococcus xanthus natural isolates
Exp Library Strategy WGA
Library Source GENOMIC
Library Selection RANDOM
Library Name MXANTHUS_KF4.3.9c1.4
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5168071  (Link to NCBI )
Experiment Title WGA of Myxococcus xanthus natural isolates
Exp Library Strategy WGA
Library Source GENOMIC
Library Selection RANDOM
Library Name MXANTHUS_KF4.3.9c1.9
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5168070  (Link to NCBI )
Experiment Title WGA of Myxococcus xanthus natural isolates
Exp Library Strategy WGA
Library Source GENOMIC
Library Selection RANDOM
Library Name MXANTHUS_KF4.3.9c1.8
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study Genome sequencing of Myxococcus xanthus isolated from soil
Organism Myxococcus xanthus KF4.3.9c1
Analysis Projects Myxococcus xanthus KF4.3.9c1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0527903
Organism Name
Myxococcus xanthus KF4.3.9c1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-DELTA  
Genus
Myxococcus  
Genus Synonyms
  
Species
Myxococcus xanthus  
Subspecies
  
Species Synonyms
  
Strain
KF4.3.9c1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 34
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Deltaproteobacteria  
NCBI Order
Myxococcales  
NCBI Family
Myxococcaceae  
NCBI Genus
Myxococcus  
NCBI Species
Myxococcus xanthus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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