PROJECT INFORMATION
GOLD Project ID
Gp0456285  
Project Name
Afipia massiliensis DSM 17498  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Afipia massiliensis DSM 17498
NCBI BioProject ID 632199
NCBI BioProject Accession PRJNA632199
NCBI Locus Tag
HNQ36  
NCBI BioSample Accession SAMN14908448
PI Markus Göker
Added By JGI automated process on 2019-10-18
Last Modified By JGI automated process on 2020-05-12
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genome sequencing as part of The One Thousand Microbial Genomes Phase 4 (KMG IV) project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing the most valuable type-strain genomes for metagenomic binning, comparative biology and taxonomic classification
Organism Afipia massiliensis DSM 17498
Analysis Projects Afipia massiliensis DSM 17498
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina NovaSeq S4
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0023266
Organism Name
Afipia massiliensis DSM 17498  
Other names (alias, synonyms, short names, common names)
Afipia massiliensis 34633  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Afipia  
Genus Synonyms
  
Species
Afipia massiliensis  
Subspecies
  
Species Synonyms
  
Strain
DSM 17498  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 17498  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1469  
Exemplar Name
Afipia massiliensis  
Taxon DOI
10.1601/tx.1469  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 211460
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Bradyrhizobiaceae  
NCBI Genus
Afipia  
NCBI Species
Afipia massiliensis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Drinking water  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AY568510
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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