PROJECT INFORMATION
GOLD Project ID
Gp0456267  
Project Name
Methanobacterium thermalcaliphilum DSM 3267  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Methanobacterium thermalcaliphilum DSM 3267
NCBI BioProject ID 632317
NCBI BioProject Accession PRJNA632317
NCBI Locus Tag
HNR54  
NCBI BioSample Accession SAMN14908460
PI Markus Göker
Added By JGI automated process on 2019-10-18
Last Modified By JGI automated process on 2020-05-12
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genome sequencing as part of The One Thousand Microbial Genomes Phase 4 (KMG IV) project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX8733232  (Link to NCBI )
Experiment Title Methanobacterium thermalcaliphilum DSM 3267
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GUCOA
Library Layout PAIRED
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing the most valuable type-strain genomes for metagenomic binning, comparative biology and taxonomic classification
Organism Methanobacterium thermalcaliphilum DSM 3267
Analysis Projects Methanobacterium thermalcaliphilum DSM 3267
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq S4
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0028596
Organism Name
Methanobacterium thermalcaliphilum DSM 3267  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-METHANOBACTERIA  
Genus
Methanobacterium  
Genus Synonyms
  
Species
Methanobacterium thermalcaliphilum  
Subspecies
  
Species Synonyms
  
Strain
DSM 3267  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 3267  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.109  
Exemplar Name
Methanobacterium thermalcaliphilum  
Taxon DOI
10.1601/tx.109  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 145262
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Methanobacteria  
NCBI Order
Methanobacteriales  
NCBI Family
Methanobacteriaceae  
NCBI Genus
Methanothermobacter  
NCBI Species
Methanothermobacter thermautotrophicus  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Biotransformation  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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