PROJECT INFORMATION
GOLD Project ID
Gp0454635  
Project Name
Pseudomonas sp. ATCC 43928  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Bacterial soil isolates
NCBI BioProject ID 539822
NCBI BioProject Accession PRJNA539822
NCBI Locus Tag
FFH90  
NCBI BioSample Accession SAMN11620939
PI
Added By JGI automated process on 2019-10-02
Last Modified By JGI automated process on 2019-10-04
Project Comments
  
Project Status
Complete and Published  
Project Relevance Evolution
Sequencing Center Indiana University (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Genome sequencing and assembly of bacteria from soil samples used in the long-term dormancy experiment  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX6798524  (Link to NCBI )
Experiment Title Nanopore sequencing
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ATCC43928_nanopore_run3
Library Layout SINGLE
Library Instrument MIN_ION
 
SRA Experiment Id SRX6798513  (Link to NCBI )
Experiment Title Illumina sequencing
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ATCC43928_illumina
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Genome sequencing and assembly of bacteria from soil samples used in the long-term dormancy experiment
Organism Pseudomonas sp. ATCC 43928
Analysis Projects Pseudomonas sp. ATCC 43928
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0527460
Organism Name
Pseudomonas sp. ATCC 43928  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pseudomonas  
Genus Synonyms
  
Species
Pseudomonas sp. ATCC 43928  
Subspecies
  
Species Synonyms
  
Strain
ATCC 43928  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 43928  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 676210
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pseudomonadales  
NCBI Family
Pseudomonadaceae  
NCBI Genus
Pseudomonas  
NCBI Species
Pseudomonas sp. ATCC 43928  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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