PROJECT INFORMATION
GOLD Project ID
Gp0453500  
Project Name
Cave wall surface microbial communities from Waikapalae Cave, Hawaii, United States - 20190126_53  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Cave wall surface microbial communities from Waikapalae Cave, Hawaii, United States - 20190126_53
NCBI BioProject ID 617107
NCBI BioProject Accession PRJNA617107
NCBI Locus Tag
HDE95  
NCBI BioSample Accession SAMN14502556
PI Nicole Pietrasiak
Added By JGI automated process on 2019-09-19
Last Modified By JGI automated process on 2020-04-03
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Cave wall surface microbial communities from Waikapalae Cave, Hawaii, United States  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Terrestrial microbial communities from various environments and locations
Biosample Cave wall surface microbial communities from Waikapalae Cave, Hawaii, United States - 20190126_53
Analysis Projects Cave wall surface microbial communities from Waikapalae Cave, Hawaii, United States - 20190126_53
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Illumina NovaSeq S4
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Cave wall surface microbial communities from Waikapalae Cave, Hawaii, United States - 20190126_53
Other Names (alias, synonyms, short names)
  
Sample Description
Cave wall surface microbial communities from Waikapalae Cave, Hawaii, United States  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1723648
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Rock-dwelling (subaerial biofilms)  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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