PROJECT INFORMATION | |||||||||||||||||
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GOLD Project ID
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Gp0453499
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Project Name
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Scytonematopsis contorta HA4267-MV1 and co-occurring heterotrophs from mud from Palolo Valley Trail, Honolulu, Hawaii, United States - 20190126_51
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Other Names
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Legacy GOLD ID
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NCBI BioProject Name | Scytonematopsis contorta HA4267-MV1 and co-occurring heterotrophs from mud from Palolo Valley Trail, Honolulu, Hawaii, United States - 20190126_51 | ||||||||||||||||
NCBI BioProject ID
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653495 |
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NCBI BioProject Accession
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PRJNA653495 |
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NCBI Locus Tag
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H4Z42
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NCBI BioSample Accession
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SAMN15740544 |
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PI | Nicole Pietrasiak | ||||||||||||||||
Added By |
JGI automated process
on 2019-09-19 |
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Last Modified By |
Supratim Mukherjee
on 2021-01-14 |
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Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Scytonematopsis contorta HA4267-MV1 and co-occurring heterotrophs from mud from Palolo Valley Trail, Honolulu, Hawaii, United States - 20190126_51
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Is JGI Project |
Yes
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Project Information Visibility
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Public | ||||||||||||||||
PROJECT TYPE | |||||||||||||||||
Specimen
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Biome |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Metagenome
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EXTERNAL PROJECT LINKS | |||||||||||||||||
JGI Portal Download | Raw Sequence Data | ||||||||||||||||
Project Information
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Database
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Genome Publications
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Other Publications
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SRA Experiment |
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PROJECT COMPOSITION | |||||||||||||||||
Study |
Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations |
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Biosample |
Scytonematopsis contorta HA4267-MV1 and co-occurring heterotrophs from mud from Palolo Valley Trail, Honolulu, Hawaii, United States - 20190126_51 |
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Organism |
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Analysis Projects |
Scytonematopsis contorta HA4267-MV1 and co-occurring heterotrophs from mud from Palolo Valley Trail, Honolulu, Hawaii, United States - 20190126_51 |
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Number of Analysis Projects (AP) |
1 |
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Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
Finishing Goal
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Level 1: Standard Draft |
Contamination Screening Input
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DNA Amplification Method
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Sorting Technology
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina NovaSeq Illumina NovaSeq S4 |
Library Method
(MIGS-28)
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Illumina Regular Fragment, 300bp, Tubes
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
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Chromosome Count |
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Plasmid Count |
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SAMPLE NAME | |
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Sample Name |
Scytonematopsis contorta HA4267-MV1 and co-occurring heterotrophs from mud from Palolo Valley Trail, Honolulu, Hawaii, United States - 20190126_51 |
Other Names (alias, synonyms, short names) |
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Sample Description |
Scytonematopsis contorta HA4267-MV1 and co-occurring heterotrophs from mud from Palolo Valley Trail, Honolulu, Hawaii, United States - 20190126_51
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SAMPLE TAXONOMY | |
NCBI Taxonomy ID |
1300146 |
GOLD CLASSIFICATION | |
Ecosystem |
Environmental
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Ecosystem Category |
Aquatic
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Ecosystem Type |
Freshwater
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Ecosystem Subtype |
Sediment
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Specific Ecosystem |
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