PROJECT INFORMATION
GOLD Project ID
Gp0453499  
Project Name
Scytonematopsis contorta HA4267-MV1 and co-occurring heterotrophs from mud from Palolo Valley Trail, Honolulu, Hawaii, United States - 20190126_51  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Scytonematopsis contorta HA4267-MV1 and co-occurring heterotrophs from mud from Palolo Valley Trail, Honolulu, Hawaii, United States - 20190126_51
NCBI BioProject ID 653495
NCBI BioProject Accession PRJNA653495
NCBI Locus Tag
H4Z42  
NCBI BioSample Accession SAMN15740544
PI Nicole Pietrasiak
Added By JGI automated process on 2019-09-19
Last Modified By Supratim Mukherjee on 2021-01-14
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Scytonematopsis contorta HA4267-MV1 and co-occurring heterotrophs from mud from Palolo Valley Trail, Honolulu, Hawaii, United States - 20190126_51  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX9168444  (Link to NCBI )
Experiment Title 20190126_51
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name GTSBS
Library Layout PAIRED
PROJECT COMPOSITION
Study Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations
Biosample Scytonematopsis contorta HA4267-MV1 and co-occurring heterotrophs from mud from Palolo Valley Trail, Honolulu, Hawaii, United States - 20190126_51
Organism
Analysis Projects Scytonematopsis contorta HA4267-MV1 and co-occurring heterotrophs from mud from Palolo Valley Trail, Honolulu, Hawaii, United States - 20190126_51
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Illumina NovaSeq S4
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Scytonematopsis contorta HA4267-MV1 and co-occurring heterotrophs from mud from Palolo Valley Trail, Honolulu, Hawaii, United States - 20190126_51
Other Names (alias, synonyms, short names)
  
Sample Description
Scytonematopsis contorta HA4267-MV1 and co-occurring heterotrophs from mud from Palolo Valley Trail, Honolulu, Hawaii, United States - 20190126_51  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1300146
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Sediment  
Specific Ecosystem
  

 

 

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