Studies
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43,778 |
|
Biosamples
|
100,585 |
|
Sequencing Projects
|
345,923 |
|
Analysis Projects
|
272,587 |
| Organisms | 378,863 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0453499
|
|
Project Name
|
Mud microbial communities from Palolo Valley Trail, Honolulu, Hawaii, United States - 20190126_51
|
|
Other Names
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|
Legacy GOLD ID
|
|
| NCBI BioProject Name |
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NCBI BioProject ID
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NCBI BioProject Accession
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NCBI Locus Tag
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NCBI BioSample Accession
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| PI | Nicole Pietrasiak |
| Added By |
JGI automated process
on 2019-09-19 |
| Last Modified By |
JGI automated process
on 2020-05-12 |
| Project Comments |
|
|
Project Status
|
Permanent Draft
|
|
Project Relevance
|
|
|
Sequencing Center
|
DOE Joint Genome Institute (JGI)
(USA)
|
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Collaborating Institute
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Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
|
|
Project Description
|
Mud microbial communities from Palolo Valley Trail, Honolulu, Hawaii, United States
|
| Is JGI Project |
Yes
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Biome |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Metagenome
|
| EXTERNAL PROJECT LINKS | |
| JGI Portal Download | Raw Sequence Data |
|
Project Information
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|
Database
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Genome Publications
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Other Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Terrestrial microbial communities from various environments and locations |
| Biosample |
Mud microbial communities from Palolo Valley Trail, Honolulu, Hawaii, United States - 20190126_51 |
| Analysis Projects |
Mud microbial communities from Palolo Valley Trail, Honolulu, Hawaii, United States - 20190126_51 |
| Number of Analysis Projects (AP) |
1
|
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
|
Finishing Goal
|
Level 1: Standard Draft |
|
Sequencing Comments
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Sequencing Technology
(MIGS-29)
|
Illumina NovaSeq Illumina NovaSeq S4 |
|
Library Method
(MIGS-28)
|
Illumina Regular Fragment, 300bp, Tubes
|
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Number Of Reads
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|
|
Read Size
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|
Vector
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|
| GC Percent |
|
| Chromosome Count |
|
| Plasmid Count |
|
| SAMPLE NAME | |
|---|---|
| Sample Name |
Mud microbial communities from Palolo Valley Trail, Honolulu, Hawaii, United States - 20190126_51 |
| Other Names (alias, synonyms, short names) |
|
| Sample Description |
Mud microbial communities from Palolo Valley Trail, Honolulu, Hawaii, United States
|
| SAMPLE TAXONOMY | |
| NCBI Taxonomy ID |
2047713 |
| GOLD CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Aquatic
|
| Ecosystem Type |
Freshwater
|
| Ecosystem Subtype |
Sediment
|
| Specific Ecosystem |
|
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