PROJECT INFORMATION
GOLD Project ID
Gp0452288  
Project Name
Soil microbial communities from Duke University greenhouse, North Carolina, United States - NS_C_2 noSuillus Control  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Soil microbial communities from Duke University greenhouse, North Carolina, United States - NS_C_2 noSuillus Control
NCBI BioProject Accession PRJNA653780
NCBI Locus Tag
H4029  
NCBI BioSample Accession SAMN15741801
Source Sample ID
PI Jennifer Bhatnagar
Added By JGI automated process on 2019-08-28
Last Modified By JGI automated process on 2022-12-25
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Soil microbial communities from Duke University greenhouse, North Carolina, United States; in absence of ectomycorrhizal fungi Suillus cothurnatus, no nitrogen added  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Restricted  
JGI Award DOI 10.46936/fics.proj.2017.49989/60006231
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX9172599  (Link to NCBI )
Experiment Title NS_C_2 soil metagenome noSuillus Control
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name GTBGU
Library Layout PAIRED
PROJECT COMPOSITION
Study Soil microbial communities from Duke University greenhouse, North Carolina, United States
Biosample Soil microbial communities from Duke University greenhouse, North Carolina, United States - NS_C_2 noSuillus Control
Analysis Projects Soil microbial communities from Duke University greenhouse, North Carolina, United States - NS_C_2 noSuillus Control
Suillus-Soil Metagenome Co-Assembly
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq S4
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Soil microbial communities from Duke University greenhouse, North Carolina, United States - NS_C_2 noSuillus Control
Other Names (alias, synonyms, short names)
  
Sample Description
Soil microbial communities from Duke University greenhouse, North Carolina, United States; in absence of ectomycorrhizal fungi Suillus cothurnatus, no nitrogen added  
SAMPLE TAXONOMY
NCBI Taxonomy ID 410658
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Greenhouse  
Specific Ecosystem
  

 

 

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