PROJECT INFORMATION
GOLD Project ID
Gp0447964  
Project Name
Escherichia albertii 06-3542  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Escherichia albertii 06-3542 genome sequencing
NCBI BioProject ID 218110
NCBI BioProject Accession PRJNA218110
NCBI Locus Tag
  
NCBI BioSample Accession SAMN07169274
PI
Added By JGI automated process on 2019-08-16
Last Modified By Hema Katta on 2019-12-04
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Centers for Disease Control and Prevention (CDC), USA (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Escherichia albertii 06-3542 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Microbiol Resour Announc PacBio Genome Sequences of Eight Escherichia albertii Strains Isolated from Humans in the United States.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2858529  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name NexteraXT
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id SRX5170196  (Link to NCBI )
Experiment Title Whole genome sequencing of Escherichia albertii
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 06-3542-Pbio-SMI5917
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5166357  (Link to NCBI )
Experiment Title Whole genome sequencing of Escherichia albertii
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 06-3542-M947-17-009
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Genome Sequences of Shiga Toxin-Producing Escherichia coli Isolates
Organism Escherichia albertii 06-3542
Analysis Projects Escherichia albertii 06-3542
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
50  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0523420
Organism Name
Escherichia albertii 06-3542  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Escherichia  
Genus Synonyms
  
Species
Escherichia albertii  
Subspecies
  
Species Synonyms
  
Strain
Jun-42  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 208962
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Escherichia  
NCBI Species
Escherichia albertii  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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