PROJECT INFORMATION
GOLD Project ID
Gp0444920  
Project Name
Pseudopropionibacterium propionicum F0230a  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Pseudopropionibacterium propionicum F0230a genome sequencing
NCBI BioProject ID 49291
NCBI BioProject Accession PRJNA49291
NCBI Locus Tag
  
NCBI BioSample Accession SAMN02415616
PI
Added By JGI automated process on 2019-08-14
Last Modified By JGI automated process on 2019-08-20
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center J. Craig Venter Institute
Collaborating Institute
  
Funding Agency
  
Project Description
Pseudopropionibacterium propionicum F0230a genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX5843350  (Link to NCBI )
Experiment Title Nextera Flex library of Propionibacterium propionicum, Oral Taxon 739, Strain F0230
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name HM-209D
Library Layout PAIRED
PROJECT COMPOSITION
Study Human Microbiome Project (HMP) Reference Genomes
Organism Pseudopropionibacterium propionicum F0230a
Analysis Projects Pseudopropionibacterium propionicum F0230a
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0005439
Organism Name
Pseudopropionibacterium propionicum F0230a  
Other names (alias, synonyms, short names, common names)
Propionibacterium propionicum F0230a  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Pseudopropionibacterium  
Genus Synonyms
Propionibacterium  
Species
Pseudopropionibacterium propionicum  
Subspecies
  
Species Synonyms
  
Strain
F0230a  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
BEI HM-209  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 767029
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Propionibacteriales  
NCBI Family
Propionibacteriaceae  
NCBI Genus
Pseudopropionibacterium  
NCBI Species
Pseudopropionibacterium propionicum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Opportunistic infection
Known Habitats Host
Human oral cavity
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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