PROJECT INFORMATION
GOLD Project ID
Gp0444194  
Project Name
Oryzias javanicus RS831  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Oryzias javanicus RS831 genome sequencing
NCBI BioProject ID 505405
NCBI BioProject Accession PRJNA505405
NCBI Locus Tag
  
NCBI BioSample Accession SAMN10417210
PI
Added By JGI automated process on 2019-08-14
Last Modified By JGI automated process on 2019-10-21
Project Comments
  
Project Status
Complete and Published  
Project Relevance Model Organism
Sequencing Center French National Institute for Agronomical Research (INRA)
Collaborating Institute
  
Funding Agency
  
Project Description
Oryzias javanicus RS831 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX5274122  (Link to NCBI )
Experiment Title Javafish_genomic_43
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160203_010221
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274166  (Link to NCBI )
Experiment Title Javafish_genomic_46
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160202_122350
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274123  (Link to NCBI )
Experiment Title Javafish_genomic_22
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160104_234727
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274167  (Link to NCBI )
Experiment Title Javafish_genomic_47
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160203_072615
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274164  (Link to NCBI )
Experiment Title Javafish_genomic_44
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160203_134223
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274165  (Link to NCBI )
Experiment Title Javafish_genomic_45
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160202_184303
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274121  (Link to NCBI )
Experiment Title Javafish_genomic_42
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160130_052950
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274162  (Link to NCBI )
Experiment Title Javafish_genomic_39
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160130_180812
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274163  (Link to NCBI )
Experiment Title Javafish_genomic_38
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160131_130854
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274160  (Link to NCBI )
Experiment Title Javafish_genomic_37
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160131_065031
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274161  (Link to NCBI )
Experiment Title Javafish_genomic_36
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160129_231033
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274159  (Link to NCBI )
Experiment Title Javafish_genomic_34
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160113_021750
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274157  (Link to NCBI )
Experiment Title Javafish_genomic_32
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160112_133939
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274158  (Link to NCBI )
Experiment Title Javafish_genomic_35
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160125_174349
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274155  (Link to NCBI )
Experiment Title Javafish_genomic_30
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160112_072016
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274156  (Link to NCBI )
Experiment Title Javafish_genomic_33
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160113_083957
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274153  (Link to NCBI )
Experiment Title Javafish_genomic_10
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m151209_145757
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274154  (Link to NCBI )
Experiment Title Javafish_genomic_31
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160111_184202
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274151  (Link to NCBI )
Experiment Title Javafish_genomic_12
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m151215_191202
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274152  (Link to NCBI )
Experiment Title Javafish_genomic_11
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m151215_001419
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274150  (Link to NCBI )
Experiment Title Javafish_genomic_13
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m151214_175506
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274148  (Link to NCBI )
Experiment Title Javafish_genomic_15
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m151215_063332
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274149  (Link to NCBI )
Experiment Title Javafish_genomic_14
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m151216_140937
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274146  (Link to NCBI )
Experiment Title Javafish_genomic_17
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m151216_013127
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274147  (Link to NCBI )
Experiment Title Javafish_genomic_16
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m151215_125245
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274144  (Link to NCBI )
Experiment Title Javafish_genomic_19
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160106_010419
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274145  (Link to NCBI )
Experiment Title Javafish_genomic_18
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m151216_075318
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274142  (Link to NCBI )
Experiment Title Javafish_genomic_5
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m151202_144355
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274143  (Link to NCBI )
Experiment Title Javafish_genomic_4
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m151202_082553
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274140  (Link to NCBI )
Experiment Title Javafish_genomic_7
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m151208_200021
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274141  (Link to NCBI )
Experiment Title Javafish_genomic_6
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m151209_084200
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274139  (Link to NCBI )
Experiment Title medaka 10X
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM PCR
Library Name Jav_NoIndex_L005
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_3000
 
SRA Experiment Id SRX5274137  (Link to NCBI )
Experiment Title Javafish_genomic_2
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m151201_194600
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274138  (Link to NCBI )
Experiment Title Javafish_genomic_1
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m151125_070537
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274135  (Link to NCBI )
Experiment Title Javafish_genomic_8
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m151209_021944
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274136  (Link to NCBI )
Experiment Title Javafish_genomic_3
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m151202_020248
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274133  (Link to NCBI )
Experiment Title Javafish_genomic_48
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160202_060446
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274134  (Link to NCBI )
Experiment Title Javafish_genomic_9
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m151208_134122
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274131  (Link to NCBI )
Experiment Title Javafish_genomic_28
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160113_145626
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274132  (Link to NCBI )
Experiment Title Javafish_genomic_29
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160112_195842
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274130  (Link to NCBI )
Experiment Title Javafish_genomic_25
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160105_060640
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274128  (Link to NCBI )
Experiment Title Javafish_genomic_27
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160112_010116
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274129  (Link to NCBI )
Experiment Title Javafish_genomic_24
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160106_072642
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274126  (Link to NCBI )
Experiment Title Javafish_genomic_21
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160105_184511
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274127  (Link to NCBI )
Experiment Title Javafish_genomic_26
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160104_172831
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274124  (Link to NCBI )
Experiment Title Javafish_genomic_23
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160106_134256
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274168  (Link to NCBI )
Experiment Title Javafish_genomic_40
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160131_002725
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274125  (Link to NCBI )
Experiment Title Javafish_genomic_20
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160105_122553
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5274169  (Link to NCBI )
Experiment Title Javafish_genomic_41
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160130_114859
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study Oryzias javanicus RS831 genome sequencing
Organism Oryzias javanicus RS831
Analysis Projects Oryzias javanicus RS831
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq
PacBio RS II
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0520019
Organism Name
Oryzias javanicus RS831  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
CHORDATA  
Genus
Oryzias  
Genus Synonyms
  
Species
Oryzias javanicus  
Subspecies
  
Species Synonyms
  
Strain
RS831  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 123683
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Metazoa  
NCBI Phylum
Chordata  
NCBI Class
Actinopteri  
NCBI Order
Beloniformes  
NCBI Family
Adrianichthyidae  
NCBI Genus
Oryzias  
NCBI Species
Oryzias javanicus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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