PROJECT INFORMATION
GOLD Project ID
Gp0444151  
Project Name
Spatholobus suberectus sv. SS-2018  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Spatholobus suberectus sv. SS-2018 genome sequencing
NCBI BioProject ID 482912
NCBI BioProject Accession PRJNA482912
NCBI Locus Tag
  
NCBI BioSample Accession SAMN09721040
PI
Added By JGI automated process on 2019-08-14
Last Modified By JGI automated process on 2019-10-21
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Guangxi University (China)
Collaborating Institute
  
Funding Agency
  
Project Description
Spatholobus suberectus sv. SS-2018 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX4553101  (Link to NCBI )
Experiment Title Whole Genome Sequencing of Spatholobus suberectus:leaves
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name NDHX00024-AK1803_L2
Library Layout PAIRED
Library Instrument HI_SEQ_X_TEN
 
SRA Experiment Id SRX4553102  (Link to NCBI )
Experiment Title Whole Genome Sequencing of Spatholobus suberectus:leaves
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name NDHX00024-AK1804_L2
Library Layout PAIRED
Library Instrument HI_SEQ_X_TEN
 
SRA Experiment Id SRX4553100  (Link to NCBI )
Experiment Title Whole Genome Sequencing of Spatholobus suberectus:leaves
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name NDHX00024-AK1805_L2
Library Layout PAIRED
Library Instrument HI_SEQ_X_TEN
 
SRA Experiment Id SRX4653719  (Link to NCBI )
Experiment Title Whole Genome Sequencing of Spatholobus suberectus:leaves
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 5_E01
Library Layout SINGLE
 
SRA Experiment Id SRX4653718  (Link to NCBI )
Experiment Title Whole Genome Sequencing of Spatholobus suberectus:leaves
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 8_H01
Library Layout SINGLE
 
SRA Experiment Id SRX4653717  (Link to NCBI )
Experiment Title Whole Genome Sequencing of Spatholobus suberectus:leaves
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 7_G01
Library Layout SINGLE
 
SRA Experiment Id SRX4653716  (Link to NCBI )
Experiment Title Whole Genome Sequencing of Spatholobus suberectus:leaves
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 2_B01
Library Layout SINGLE
 
SRA Experiment Id SRX4653726  (Link to NCBI )
Experiment Title Whole Genome Sequencing of Spatholobus suberectus:leaves
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name DES02309_L2
Library Layout PAIRED
Library Instrument HI_SEQ_X_TEN
 
SRA Experiment Id SRX4653715  (Link to NCBI )
Experiment Title Whole Genome Sequencing of Spatholobus suberectus:leaves
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 1_A01
Library Layout SINGLE
 
SRA Experiment Id SRX4653714  (Link to NCBI )
Experiment Title Whole Genome Sequencing of Spatholobus suberectus:leaves
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 4_D01
Library Layout SINGLE
 
SRA Experiment Id SRX4653725  (Link to NCBI )
Experiment Title Whole Genome Sequencing of Spatholobus suberectus:leaves
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name DES02309_L1
Library Layout PAIRED
Library Instrument HI_SEQ_X_TEN
 
SRA Experiment Id SRX4653713  (Link to NCBI )
Experiment Title Whole Genome Sequencing of Spatholobus suberectus:leaves
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 3_C01
Library Layout SINGLE
 
SRA Experiment Id SRX4653724  (Link to NCBI )
Experiment Title Whole Genome Sequencing of Spatholobus suberectus:leaves
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name DES01994_L4
Library Layout PAIRED
Library Instrument HI_SEQ_X_TEN
 
SRA Experiment Id SRX4653723  (Link to NCBI )
Experiment Title Whole Genome Sequencing of Spatholobus suberectus:leaves
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 11_K01
Library Layout SINGLE
 
SRA Experiment Id SRX4653722  (Link to NCBI )
Experiment Title Whole Genome Sequencing of Spatholobus suberectus:leaves
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 10_J01
Library Layout SINGLE
 
SRA Experiment Id SRX4653721  (Link to NCBI )
Experiment Title Whole Genome Sequencing of Spatholobus suberectus:leaves
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 9_I01
Library Layout SINGLE
 
SRA Experiment Id SRX4653720  (Link to NCBI )
Experiment Title Whole Genome Sequencing of Spatholobus suberectus:leaves
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 6_F01
Library Layout SINGLE
 
SRA Experiment Id SRX4680931  (Link to NCBI )
Experiment Title Whole Genome Sequencing of Spatholobus suberectus:leaves
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection Restriction Digest
Library Name DTG_HiC_169
Library Layout PAIRED
Library Instrument HI_SEQ_X_TEN
 
SRA Experiment Id SRX4606127  (Link to NCBI )
Experiment Title Whole Genome Sequencing of Spatholobus suberectus:leaves
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name NDHX00024-AK1647_L2
Library Layout PAIRED
Library Instrument HI_SEQ_X_TEN
PROJECT COMPOSITION
Study Spatholobus suberectus sv. SS-2018 genome sequencing
Organism Spatholobus suberectus sv. SS-2018
Analysis Projects Spatholobus suberectus sv. SS-2018
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio Sequel
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0519977
Organism Name
Spatholobus suberectus sv. SS-2018  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PLANTS-STREPTOPHYTA  
Genus
Spatholobus  
Genus Synonyms
  
Species
Spatholobus suberectus  
Subspecies
  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar/Cultivar
SS-2018  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 455371
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Viridiplantae  
NCBI Phylum
Streptophyta  
NCBI Class
Magnoliopsida  
NCBI Order
Fabales  
NCBI Family
Fabaceae  
NCBI Genus
Spatholobus  
NCBI Species
Spatholobus suberectus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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