PROJECT INFORMATION
GOLD Project ID
Gp0444142  
Project Name
Cannabis sativa ERS2852417  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Cannabis sativa ERS2852417 genome sequencing
NCBI BioProject ID 501832
NCBI BioProject Accession PRJEB29284
NCBI Locus Tag
  
NCBI BioSample Accession SAMEA5040675
PI
Added By JGI automated process on 2019-08-14
Last Modified By JGI automated process on 2019-10-21
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Harvard University (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Cannabis sativa ERS2852417 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id ERX3863339  (Link to NCBI )
Experiment Title NextSeq 500 paired end sequencing
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name unspecified
Library Layout PAIRED
Library Instrument NEXT_SEQ_500
 
SRA Experiment Id ERX3863298  (Link to NCBI )
Experiment Title NextSeq 500 paired end sequencing
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name MJ-350
Library Layout PAIRED
Library Instrument NEXT_SEQ_500
 
SRA Experiment Id ERX3863340  (Link to NCBI )
Experiment Title MinION sequencing
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name X235
Library Layout SINGLE
Library Instrument MIN_ION
PROJECT COMPOSITION
Study Cannabis sativa ERS2852417 genome sequencing
Organism Cannabis sativa ERS2852417
Analysis Projects Cannabis sativa ERS2852417
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0519968
Organism Name
Cannabis sativa ERS2852417  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PLANTS-STREPTOPHYTA  
Genus
Cannabis  
Genus Synonyms
  
Species
Cannabis sativa  
Subspecies
  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar/Cultivar
ERS2852417  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 3483
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Viridiplantae  
NCBI Phylum
Streptophyta  
NCBI Class
Magnoliopsida  
NCBI Order
Rosales  
NCBI Family
Cannabaceae  
NCBI Genus
Cannabis  
NCBI Species
Cannabis sativa  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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