PROJECT INFORMATION
GOLD Project ID
Gp0444097  
Project Name
Labeo rohita DASCIFA01  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Labeo rohita DASCIFA01 genome sequencing
NCBI BioProject ID 437789
NCBI BioProject Accession PRJNA437789
NCBI Locus Tag
  
NCBI BioSample Accession SAMN08685245
PI
Added By JGI automated process on 2019-08-14
Last Modified By JGI automated process on 2019-10-21
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Agricultural
Sequencing Center Central Institute of Freshwater Aquaculture (CIFA)
Collaborating Institute
  
Funding Agency
  
Project Description
Labeo rohita DASCIFA01 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX5382034  (Link to NCBI )
Experiment Title WGS of Labeo rohita(Rohu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name rohu-454-shotgun-lib4
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
 
SRA Experiment Id SRX5610960  (Link to NCBI )
Experiment Title WGS of Labeo robita
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name illumina-MS-MP-24
Library Layout PAIRED
Library Instrument NEXT_SEQ_500
 
SRA Experiment Id SRX5460131  (Link to NCBI )
Experiment Title WGS of Labeo robita
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name illumina-MS-PE-5
Library Layout PAIRED
 
SRA Experiment Id SRX5460132  (Link to NCBI )
Experiment Title WGS of Labeo robita
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name illumina-MS-PE-4
Library Layout PAIRED
 
SRA Experiment Id SRX5460133  (Link to NCBI )
Experiment Title WGS of Labeo robita
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name illumina-MS-MP-46
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id SRX5449862  (Link to NCBI )
Experiment Title WGS of Labeo robita
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name illumina-6kB
Library Layout PAIRED
Library Instrument NEXT_SEQ_500
 
SRA Experiment Id SRX5449863  (Link to NCBI )
Experiment Title WGS of Labeo robita
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name illumina-lib2-sg
Library Layout PAIRED
Library Instrument NEXT_SEQ_500
 
SRA Experiment Id SRX5449864  (Link to NCBI )
Experiment Title WGS of Labeo robita
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name illumina-lib1-sg
Library Layout PAIRED
Library Instrument NEXT_SEQ_500
 
SRA Experiment Id SRX5449865  (Link to NCBI )
Experiment Title WGS of Labeo robita
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name illumina-3kb
Library Layout PAIRED
Library Instrument NEXT_SEQ_500
 
SRA Experiment Id SRX5382022  (Link to NCBI )
Experiment Title WGS of Labeo rohita(Rohu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name rohu-3kb-lib1
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
 
SRA Experiment Id SRX5610959  (Link to NCBI )
Experiment Title WGS of Labeo robita
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name illumina-MS-MP-46
Library Layout PAIRED
Library Instrument NEXT_SEQ_500
 
SRA Experiment Id SRX5382023  (Link to NCBI )
Experiment Title WGS of Labeo rohita(Rohu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name rohu-3kb-lib2
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
 
SRA Experiment Id SRX5382024  (Link to NCBI )
Experiment Title WGS of Labeo rohita(Rohu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name rohu-3kb-lib3
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
 
SRA Experiment Id SRX5382025  (Link to NCBI )
Experiment Title WGS of Labeo rohita(Rohu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name rohu-pe20kb-lib1
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
 
SRA Experiment Id SRX5460140  (Link to NCBI )
Experiment Title WGS of Labeo robita
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name illumina-MS-PE-2
Library Layout PAIRED
 
SRA Experiment Id SRX5382026  (Link to NCBI )
Experiment Title WGS of Labeo rohita(Rohu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name rohu-pe20kb-lib2
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
 
SRA Experiment Id SRX5382027  (Link to NCBI )
Experiment Title WGS of Labeo rohita(Rohu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name rohu-pe20kb-lib3
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
 
SRA Experiment Id SRX5382028  (Link to NCBI )
Experiment Title WGS of Labeo rohita(Rohu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name rohu-pe20kb-lib4
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
 
SRA Experiment Id SRX5382029  (Link to NCBI )
Experiment Title WGS of Labeo rohita(Rohu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name rohu-pe20kb-lib5
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
 
SRA Experiment Id SRX5460134  (Link to NCBI )
Experiment Title WGS of Labeo robita
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name illumina-MS-MP-24
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id SRX5460135  (Link to NCBI )
Experiment Title WGS of Labeo robita
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name illumina-MS-MP-810
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id SRX5460136  (Link to NCBI )
Experiment Title WGS of Labeo robita
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name illumina-MS-MP-68
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id SRX5460137  (Link to NCBI )
Experiment Title WGS of Labeo robita
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name illumina-MS-PE-1
Library Layout PAIRED
 
SRA Experiment Id SRX5460138  (Link to NCBI )
Experiment Title WGS of Labeo robita
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name illumina-MS-MP-1012
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id SRX5382030  (Link to NCBI )
Experiment Title WGS of Labeo rohita(Rohu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name rohu-454-shotgun-lib1
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
 
SRA Experiment Id SRX5382031  (Link to NCBI )
Experiment Title WGS of Labeo rohita(Rohu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name rohu-454-shotgun-lib2
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
 
SRA Experiment Id SRX5460139  (Link to NCBI )
Experiment Title WGS of Labeo robita
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name illumina-MS-PE-3
Library Layout PAIRED
 
SRA Experiment Id SRX5382032  (Link to NCBI )
Experiment Title WGS of Labeo rohita(Rohu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name rohu-ion-shotgun-lib
Library Layout SINGLE
Library Instrument ION_TORRENT_PGM
 
SRA Experiment Id SRX5382033  (Link to NCBI )
Experiment Title WGS of Labeo rohita(Rohu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name rohu-454-shotgun-lib3
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
PROJECT COMPOSITION
Study Labeo rohita DASCIFA01 genome sequencing
Organism Labeo rohita DASCIFA01
Analysis Projects Labeo rohita DASCIFA01
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0519927
Organism Name
Labeo rohita DASCIFA01  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
CHORDATA  
Genus
Labeo  
Genus Synonyms
  
Species
Labeo rohita  
Subspecies
  
Species Synonyms
  
Strain
DASCIFA01  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 84645
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Metazoa  
NCBI Phylum
Chordata  
NCBI Class
Actinopteri  
NCBI Order
Cypriniformes  
NCBI Family
Cyprinidae  
NCBI Genus
Labeo  
NCBI Species
Labeo rohita  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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