PROJECT INFORMATION
GOLD Project ID
Gp0443561  
Project Name
Mycobacterium avium paratuberculosis Telford  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Mycobacterium avium paratuberculosis Telford genome sequencing
NCBI BioProject ID 504678
NCBI BioProject Accession PRJNA504678
NCBI Locus Tag
  
NCBI BioSample Accession SAMN10396996
PI
Added By JGI automated process on 2019-08-14
Last Modified By Hema Katta on 2019-12-13
Project Comments
  
Project Status
Complete and Published  
Project Relevance Agricultural
Sequencing Center AgResearch Limited (New Zealand)
Collaborating Institute
  
Funding Agency
  
Project Description
Mycobacterium avium paratuberculosis Telford genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Microbiol Resour Announc Complete Genome Sequence of the Telford Type S Strain of Mycobacterium avium subsp. paratuberculosis.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX4997502  (Link to NCBI )
Experiment Title WGS of Mycobacterium avium subsp. paratuberculosis: IS1311 type S IS900 RFLP type S1 strain
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AgAMT
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id SRX4997501  (Link to NCBI )
Experiment Title WGS of Mycobacterium avium subsp. paratuberculosis: IS1311 type S IS900 RFLP type S1 strain
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PRI4834A5_0.1nM_H01
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study Mycobacterium avium paratuberculosis Telford genome sequencing
Organism Mycobacterium avium paratuberculosis Telford
Analysis Projects Mycobacterium avium paratuberculosis Telford
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
PacBio RS II
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
69  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0519418
Organism Name
Mycobacterium avium paratuberculosis Telford  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Mycobacterium  
Genus Synonyms
  
Species
Mycobacterium avium  
Subspecies
paratuberculosis  
Species Synonyms
  
Strain
Telford  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1770
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Corynebacteriales  
NCBI Family
Mycobacteriaceae  
NCBI Genus
Mycobacterium  
NCBI Species
Mycobacterium avium  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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