PROJECT INFORMATION
GOLD Project ID
Gp0443226  
Project Name
Dichelobacter nodosus VCS1703A  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Dichelobacter nodosus VCS1703A genome sequencing
NCBI BioProject ID 431368
NCBI BioProject Accession PRJNA431368
NCBI Locus Tag
  
NCBI BioSample Accession SAMN08389740
PI
Added By JGI automated process on 2019-08-14
Last Modified By JGI automated process on 2019-08-20
Project Comments
  
Project Status
Complete and Published  
Project Relevance Agricultural
Sequencing Center Sher-e-Kashmir University of Agricultural Sciences and Technology
Collaborating Institute
  
Funding Agency
  
Project Description
Dichelobacter nodosus VCS1703A genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3594754  (Link to NCBI )
Experiment Title Whole Genome Sequence of Dichelobacter nodosus; Gram Negative, Obligate Anaerobe (Strain ID. JKS-07B); Isolated from: Sheep (Ovis aries), Footrot
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection unspecified
Library Name WGS1_DH
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Dichelobacter nodosus VCS1703A genome sequencing
Organism Dichelobacter nodosus VCS1703A
Analysis Projects Dichelobacter nodosus VCS1703A
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0000158
Organism Name
Dichelobacter nodosus VCS1703A  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Dichelobacter  
Genus Synonyms
  
Species
Dichelobacter nodosus  
Subspecies
  
Species Synonyms
  
Strain
VCS1703A  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 246195
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Cardiobacteriales  
NCBI Family
Cardiobacteriaceae  
NCBI Genus
Dichelobacter  
NCBI Species
Dichelobacter nodosus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases Ovine footrot
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?