PROJECT INFORMATION
GOLD Project ID
Gp0443050  
Project Name
Euzebya pacifica DY32-46  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Euzebya pacifica DY32-46 genome sequencing
NCBI BioProject Accession PRJNA481858
NCBI Locus Tag
DVS28  
NCBI BioSample Accession SAMN09691332
Source Sample ID
PI Unknown
Added By JGI automated process on 2019-08-14
Last Modified By Mahathi Kandimalla on 2023-01-13
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Zhejiang Sci-Tech University, China China (China)
Collaborating Institute
  
Funding Agency
  
Project Description
Euzebya pacifica DY32-46 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications International journal of systematic and evolutionary microbiology: .
PubMed: 34255620 DOI: 10.1099/ijsem.0.004864
Other Publications
  
Ignored Publications International journal of systematic and evolutionary microbiology: 68(5):1743-1748 Kordiimonas pumila sp. nov., isolated from coastal sediment.
PubMed: 29620500 DOI: 10.1099/ijsem.0.002740
Unassigned Publications International journal of systematic and evolutionary microbiology: 68(5):1743-1748 Kordiimonas pumila sp. nov., isolated from coastal sediment.
PubMed: 29620500 DOI: 10.1099/ijsem.0.002740
SRA Experiment
  
PROJECT COMPOSITION
Study Genomic sequencing of culturable prokaryotes from various samples
Organism Euzebya pacifica DY32-46
Analysis Projects Euzebya pacifica DY32-46
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq
PacBio RS II
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
70.6  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0518921
Organism Name
Euzebya pacifica DY32-46  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Euzebya  
Genus Synonyms
  
Species
Euzebya pacifica  
Subspecies
  
Species Synonyms
  
Strain
DY32-46  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
MCCC 1K03476  
Type Strain
Yes  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1608957
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinomycetota  
NCBI Class
Nitriliruptoria  
NCBI Order
Euzebyales  
NCBI Family
Euzebyaceae  
NCBI Genus
Euzebya  
NCBI Species
Euzebya pacifica  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
Nonsporulating  
Temperature Range
  
Salinity
Halotolerant  
pH
6  
Cell Diameter
  
Cell Length
  
Color
Pink  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Sea water
Metabolisms
  
Phenotypes
  
Energy Sources Chemoorganotroph

 

 

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