PROJECT INFORMATION
GOLD Project ID
Gp0442930  
Project Name
Acidibrevibacterium fodinaquatile G45-3  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Acidibrevibacterium fodinaquatile G45-3 genome sequencing
NCBI BioProject ID 454169
NCBI BioProject Accession PRJNA454169
NCBI Locus Tag
DEF76  
NCBI BioSample Accession SAMN09005679
PI
Added By JGI automated process on 2019-08-14
Last Modified By Supratim Mukherjee on 2019-09-05
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Chinese Academy of Science, Institute of Microbiology (China)
Collaborating Institute
  
Funding Agency
  
Project Description
Acidisphaera sp. G45-3 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications International journal of systematic and evolutionary microbiology Acidibrevibacterium fodinaquatile gen. nov., sp. nov., isolated from acidic mine drainage.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Acidisphaera sp. G45-3 genome sequencing
Organism Acidibrevibacterium fodinaquatile G45-3
Analysis Projects Acidibrevibacterium fodinaquatile G45-3
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 4000
PacBio RS II
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0518806
Organism Name
Acidibrevibacterium fodinaquatile G45-3  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Acidibrevibacterium  
Genus Synonyms
  
Species
Acidibrevibacterium fodinaquatile  
Subspecies
  
Species Synonyms
  
Strain
G45-3  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Yes  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1969806
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodospirillales  
NCBI Family
Acetobacteraceae  
NCBI Genus
Acidibrevibacterium  
NCBI Species
Acidibrevibacterium fodinaquatile  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Groundwater  
Specific Ecosystem
Acid Mine Drainage  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
4  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes Catalase positive
Energy Sources
  

 

 

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