Studies
|
47,488 |
|
Biosamples
|
121,419 |
|
Sequencing Projects
|
388,853 |
|
Analysis Projects
|
310,138 |
| Organisms | 403,380 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0442757
|
|
Project Name
|
Lysinimonas sp. 2DFWR-13
|
|
Other Names
|
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name | Protaetiibacter intestinalis 2DFWR-13 genome sequencing |
|
NCBI BioProject ID
|
493671 |
|
NCBI BioProject Accession
|
PRJNA493671 |
|
NCBI Locus Tag
|
D7I47
|
|
NCBI BioSample Accession
|
SAMN10141032 |
| PI | |
| Added By |
JGI automated process
on 2019-08-14 |
| Last Modified By |
Supratim Mukherjee
on 2020-12-27 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Agricultural |
|
Sequencing Center
|
National Institute of Agricultural Science
|
|
Collaborating Institute
|
|
|
Funding Agency
|
|
|
Project Description
|
Protaetiibacter intestinalis 2DFWR-13 genome sequencing
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
Project Information
|
|
|
Database
|
|
|
Genome Publications
|
International Journal of Systematic and Evolutionary Microbiology
69(7):2101-2107
Protaetiibacter intestinalis gen. nov., of the family Microbacteriaceae, isolated from gut of Protaetia brevitarsis seulensis, reclassification of Lysinimonas kribbensis Jang et al. 2013 as Pseudolysinimonas kribbensis gen. nov., comb. nov. and emended description of the genus Lysinimonas Jang et al. 2013.
|
|
Other Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Protaetiibacter intestinalis 2DFWR-13 genome sequencing |
| Organism |
Protaetiibacter intestinalis 2DFWR-13 |
| Analysis Projects |
Lysinimonas sp. 2DFWR-13 |
| Number of Analysis Projects (AP) |
1
|
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
PacBio RS II |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0518649 |
| Organism Name |
Protaetiibacter intestinalis 2DFWR-13
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
ACTINOBACTERIA
|
| Genus |
Protaetiibacter
|
| Genus Synonyms |
|
| Species |
Protaetiibacter intestinalis
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
2DFWR-13
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
KACC 19321
|
| Type Strain |
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
2419774 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Actinobacteria
|
| NCBI Class |
Actinobacteria
|
| NCBI Order |
Micrococcales
|
| NCBI Family |
Microbacteriaceae
|
| NCBI Genus |
Protaetiibacter
|
| NCBI Species |
Protaetiibacter intestinalis
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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